miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 182511 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15804 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 142925 0.8 0.238133
Target:  5'- uGGUCUcggccGCGCCGCcgccGCCGCCCGCUCGCc -3'
miRNA:   3'- -CCAGA-----CGUGGUGu---UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 50751 0.79 0.26796
Target:  5'- cGGUggGCGCCGCcACCACCUGCUCGCa -3'
miRNA:   3'- -CCAgaCGUGGUGuUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182863 0.77 0.3509
Target:  5'- aGGcCUGC-CCACuGACCucaugugGCCCACCCACu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 16156 0.77 0.3509
Target:  5'- aGGcCUGC-CCACuGACCucaugugGCCCACCCACu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 169133 0.77 0.367304
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 2426 0.77 0.367304
Target:  5'- -aUCUGCcCgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 31008 0.76 0.38341
Target:  5'- cGGUCaGCACgCGCAgcGCCGCCCcguccCCCGCg -3'
miRNA:   3'- -CCAGaCGUG-GUGU--UGGUGGGu----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 96323 0.76 0.399979
Target:  5'- aGGaCUGCACCcaguGCAACCcCCCuuCCCACg -3'
miRNA:   3'- -CCaGACGUGG----UGUUGGuGGGu-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 102091 0.76 0.399979
Target:  5'- cGUCUGgAUgGCGaaGCCGCCCGCCUGCa -3'
miRNA:   3'- cCAGACgUGgUGU--UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 132212 0.76 0.408433
Target:  5'- gGGUgcCUGCugCGCGGCguCuCCGCCCACa -3'
miRNA:   3'- -CCA--GACGugGUGUUGguG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 70198 0.75 0.425671
Target:  5'- gGGUCUGUucuCUAUAGCCACCgGCuCCAUg -3'
miRNA:   3'- -CCAGACGu--GGUGUUGGUGGgUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 25673 0.75 0.440659
Target:  5'- gGGUCUGgagagcagcggcccCACCACAACCACCUugCUu- -3'
miRNA:   3'- -CCAGAC--------------GUGGUGUUGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 159204 0.75 0.461404
Target:  5'- cGUCUGUugcauCCACuuCCACuCCAUCCACa -3'
miRNA:   3'- cCAGACGu----GGUGuuGGUG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 120046 0.74 0.474281
Target:  5'- gGGUCUGCgggcugggcgcggacGCCGC-GCC-CCaCACCCACa -3'
miRNA:   3'- -CCAGACG---------------UGGUGuUGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 167934 0.74 0.479854
Target:  5'- -aUCUGCcUgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 1227 0.74 0.479854
Target:  5'- -aUCUGCcUgGCAACCGCCUACCuCACa -3'
miRNA:   3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 180716 0.74 0.489214
Target:  5'- --cCUGC-CCGC--CCGCCCGCCCACc -3'
miRNA:   3'- ccaGACGuGGUGuuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 14009 0.74 0.489214
Target:  5'- --cCUGC-CCGC--CCGCCCGCCCACc -3'
miRNA:   3'- ccaGACGuGGUGuuGGUGGGUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.