Results 21 - 40 of 203 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 35483 | 0.74 | 0.489214 |
Target: 5'- cGUCcccgGC-CCGCc-CCGCCCACCCGCg -3' miRNA: 3'- cCAGa---CGuGGUGuuGGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 169277 | 0.73 | 0.527456 |
Target: 5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3' miRNA: 3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 2570 | 0.73 | 0.527456 |
Target: 5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3' miRNA: 3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 11423 | 0.73 | 0.537194 |
Target: 5'- -cUCU-CGCCGCGcGCCACCCAgCCCACc -3' miRNA: 3'- ccAGAcGUGGUGU-UGGUGGGU-GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 178130 | 0.73 | 0.537194 |
Target: 5'- -cUCU-CGCCGCGcGCCACCCAgCCCACc -3' miRNA: 3'- ccAGAcGUGGUGU-UGGUGGGU-GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 15845 | 0.73 | 0.537194 |
Target: 5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3' miRNA: 3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 182552 | 0.73 | 0.537194 |
Target: 5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3' miRNA: 3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 60104 | 0.73 | 0.546994 |
Target: 5'- gGGUCUG-GCC-CGACC-CgCCGCCCGCg -3' miRNA: 3'- -CCAGACgUGGuGUUGGuG-GGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 109669 | 0.73 | 0.55685 |
Target: 5'- uGGUCUGCcagACCcagcaGCAGCUGCCCAgguCCUACg -3' miRNA: 3'- -CCAGACG---UGG-----UGUUGGUGGGU---GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 38951 | 0.73 | 0.55685 |
Target: 5'- cGGUgUGCGagaUACcguUCGCCCACCCACg -3' miRNA: 3'- -CCAgACGUg--GUGuu-GGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 76959 | 0.73 | 0.55685 |
Target: 5'- aGGacUCUGCggugGCCAUcGCCACCCugCUGCa -3' miRNA: 3'- -CC--AGACG----UGGUGuUGGUGGGugGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 174519 | 0.73 | 0.566757 |
Target: 5'- aGUCUGC-CCAgCAACCugUCACUCAUu -3' miRNA: 3'- cCAGACGuGGU-GUUGGugGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 7812 | 0.73 | 0.566757 |
Target: 5'- aGUCUGC-CCAgCAACCugUCACUCAUu -3' miRNA: 3'- cCAGACGuGGU-GUUGGugGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 16252 | 0.73 | 0.575711 |
Target: 5'- uGGcCUGC-CCACuGACCucaugugGCCCGCCCAUu -3' miRNA: 3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 182959 | 0.73 | 0.575711 |
Target: 5'- uGGcCUGC-CCACuGACCucaugugGCCCGCCCAUu -3' miRNA: 3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 155767 | 0.73 | 0.576708 |
Target: 5'- cGGgcagGCACagCACGGCCGCCCccACCCGCc -3' miRNA: 3'- -CCaga-CGUG--GUGUUGGUGGG--UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 27761 | 0.73 | 0.576708 |
Target: 5'- cGUggGCACCGCGGCCAacaCGCCCAUg -3' miRNA: 3'- cCAgaCGUGGUGUUGGUgg-GUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 80375 | 0.72 | 0.586697 |
Target: 5'- cGUgUGCGCUGCccGGCCGCCCucgcccuCCCACa -3' miRNA: 3'- cCAgACGUGGUG--UUGGUGGGu------GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 50811 | 0.72 | 0.586697 |
Target: 5'- aGGUCUucuucucggGCACCGCGGCC-CCgGCgCGCg -3' miRNA: 3'- -CCAGA---------CGUGGUGUUGGuGGgUGgGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 158063 | 0.72 | 0.586697 |
Target: 5'- uGGUgUGCACCucCAcccugGCCACCUGCCC-Cg -3' miRNA: 3'- -CCAgACGUGGu-GU-----UGGUGGGUGGGuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home