miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 18288 0.66 0.906466
Target:  5'- aGGUUagaGCcCC-CAGagugaCACCCGCCCACu -3'
miRNA:   3'- -CCAGa--CGuGGuGUUg----GUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 6022 0.66 0.906466
Target:  5'- gGGcCUGC-CCACu-CUACCCuaagGCCCAa -3'
miRNA:   3'- -CCaGACGuGGUGuuGGUGGG----UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 77451 0.66 0.906466
Target:  5'- uGGUCUcGUGCCccuGCuACCGccuacacaucCCCACCUACa -3'
miRNA:   3'- -CCAGA-CGUGG---UGuUGGU----------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 100571 0.66 0.906466
Target:  5'- cGUC-GCACCcgcCGGCCGCgucccUCACCCGCc -3'
miRNA:   3'- cCAGaCGUGGu--GUUGGUG-----GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 89116 0.66 0.906466
Target:  5'- cGGgggGCAUCcuGCuacACCACCCGCCCu- -3'
miRNA:   3'- -CCagaCGUGG--UGu--UGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 174714 0.66 0.905857
Target:  5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3'
miRNA:   3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 8007 0.66 0.905857
Target:  5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3'
miRNA:   3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 58891 0.66 0.902782
Target:  5'- aGGcUCUGCGCCGCGuccagcguggcgaggACCAgggcggaccaCCACCUGCc -3'
miRNA:   3'- -CC-AGACGUGGUGU---------------UGGUg---------GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 55153 0.66 0.90028
Target:  5'- --cCUGCGCC-CGAaaGCCCugCCAa -3'
miRNA:   3'- ccaGACGUGGuGUUggUGGGugGGUg -5'
3592 5' -56.7 NC_001650.1 + 76427 0.66 0.90028
Target:  5'- ---gUGCGCCAUGACCACcgCCACCa-- -3'
miRNA:   3'- ccagACGUGGUGUUGGUG--GGUGGgug -5'
3592 5' -56.7 NC_001650.1 + 119473 0.66 0.90028
Target:  5'- --cUUGCACUuucGCAGCUACUCucuGCCCACc -3'
miRNA:   3'- ccaGACGUGG---UGUUGGUGGG---UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 71335 0.66 0.90028
Target:  5'- --cCUGCGCCcuCAggucccucuGCCACCCAaaggUCCACa -3'
miRNA:   3'- ccaGACGUGGu-GU---------UGGUGGGU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 36551 0.66 0.90028
Target:  5'- uGUCUauggGCACCACcccGGCCACCUugaccuuggACaCCGCg -3'
miRNA:   3'- cCAGA----CGUGGUG---UUGGUGGG---------UG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 135608 0.66 0.90028
Target:  5'- cGG-CgcaCACCACAGCUAgCCuggcGCCCGCg -3'
miRNA:   3'- -CCaGac-GUGGUGUUGGUgGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 159842 0.66 0.90028
Target:  5'- gGGUCUGgGaCCACugAACCGCUUgaaGCCCGg -3'
miRNA:   3'- -CCAGACgU-GGUG--UUGGUGGG---UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 33975 0.66 0.90028
Target:  5'- uGUCaGUACCcuCAACCugacugacauACCCACCCuACa -3'
miRNA:   3'- cCAGaCGUGGu-GUUGG----------UGGGUGGG-UG- -5'
3592 5' -56.7 NC_001650.1 + 116252 0.66 0.90028
Target:  5'- uGGUCUugGCCuCGGaCACCCGCCCGu -3'
miRNA:   3'- -CCAGAcgUGGuGUUgGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 121492 0.66 0.899015
Target:  5'- --cCUGCGCCgcuGCAGCCccaccagcaucuCCCACCgGCu -3'
miRNA:   3'- ccaGACGUGG---UGUUGGu-----------GGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 88020 0.66 0.893868
Target:  5'- gGGUgCUgGCucuCUGCcAUCACUCACCCACa -3'
miRNA:   3'- -CCA-GA-CGu--GGUGuUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 136150 0.66 0.893868
Target:  5'- uGGcCaUGCGCCugAAggCGCCC-CCCGCg -3'
miRNA:   3'- -CCaG-ACGUGGugUUg-GUGGGuGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.