miRNA display CGI


Results 41 - 60 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 127965 0.66 0.893868
Target:  5'- aGGUgcCUGCccGCCAUcuaCACCCagACCCGCg -3'
miRNA:   3'- -CCA--GACG--UGGUGuugGUGGG--UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 155250 0.67 0.887235
Target:  5'- -cUCUGCgACCccuCGGCCGCCUACCa-- -3'
miRNA:   3'- ccAGACG-UGGu--GUUGGUGGGUGGgug -5'
3592 5' -56.7 NC_001650.1 + 52634 0.67 0.887235
Target:  5'- --cCUGCGCCAgaGACC-CCCACUCu- -3'
miRNA:   3'- ccaGACGUGGUg-UUGGuGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 109045 0.67 0.887235
Target:  5'- uGGgCaGCugCACGGCCcgcuCCCACgCGCg -3'
miRNA:   3'- -CCaGaCGugGUGUUGGu---GGGUGgGUG- -5'
3592 5' -56.7 NC_001650.1 + 51686 0.67 0.887235
Target:  5'- -uUUUGCGCCGuuuGCCAauCCCAgCCACa -3'
miRNA:   3'- ccAGACGUGGUgu-UGGU--GGGUgGGUG- -5'
3592 5' -56.7 NC_001650.1 + 147988 0.67 0.887235
Target:  5'- --cCUGCGCU-CggUCGCCCGCCCc- -3'
miRNA:   3'- ccaGACGUGGuGuuGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 132137 0.67 0.887235
Target:  5'- cGUgaGCAgggcCCACAGCaggaaGCCCGCCCu- -3'
miRNA:   3'- cCAgaCGU----GGUGUUGg----UGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 58068 0.67 0.885202
Target:  5'- cGGg--GCACgcugaugagauccuCGCAGCCGCCCGCCgGg -3'
miRNA:   3'- -CCagaCGUG--------------GUGUUGGUGGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 45130 0.67 0.880383
Target:  5'- aGGUgaGaaGCuCACAGCUACCCugCCAg -3'
miRNA:   3'- -CCAgaCg-UG-GUGUUGGUGGGugGGUg -5'
3592 5' -56.7 NC_001650.1 + 22895 0.67 0.880383
Target:  5'- aGGUCUGgACgGCcgccaggauggaGGCCAgCCGCCgGCc -3'
miRNA:   3'- -CCAGACgUGgUG------------UUGGUgGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 124505 0.67 0.880383
Target:  5'- cGUC--CGCCGCGGCCucguCCCugCCAUu -3'
miRNA:   3'- cCAGacGUGGUGUUGGu---GGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 131559 0.67 0.880383
Target:  5'- aGUCccguacaggGCcCC-CGGCCggGCCCACCCGCg -3'
miRNA:   3'- cCAGa--------CGuGGuGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 30475 0.67 0.880383
Target:  5'- gGGUCU-CGCC-CAu---CCCGCCCGCg -3'
miRNA:   3'- -CCAGAcGUGGuGUugguGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 48974 0.67 0.880383
Target:  5'- ---aUGCACCAUcAUCACCCugCCc- -3'
miRNA:   3'- ccagACGUGGUGuUGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 164874 0.67 0.880383
Target:  5'- gGGUUgaGCGCCGCGGucCCACCgggaGCCCGg -3'
miRNA:   3'- -CCAGa-CGUGGUGUU--GGUGGg---UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 133112 0.67 0.873317
Target:  5'- aGUCUcgcggagcggGCGCCACcGCCuccaccaccuCCCGCUCGCg -3'
miRNA:   3'- cCAGA----------CGUGGUGuUGGu---------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11794 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 5360 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 168419 0.67 0.873317
Target:  5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3'
miRNA:   3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 172067 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.