miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 182511 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 21746 0.71 0.687171
Target:  5'- gGGUC--CACCGCAGCCgcgGCCCuCCCAg -3'
miRNA:   3'- -CCAGacGUGGUGUUGG---UGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 145951 0.7 0.697109
Target:  5'- cGGacCUGCccGCCAUGgcccuGCCGCCCugCCACc -3'
miRNA:   3'- -CCa-GACG--UGGUGU-----UGGUGGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 50490 0.66 0.918153
Target:  5'- cGUCUcCcCCGCcGCCGCCCGCUCcCg -3'
miRNA:   3'- cCAGAcGuGGUGuUGGUGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 96323 0.76 0.399979
Target:  5'- aGGaCUGCACCcaguGCAACCcCCCuuCCCACg -3'
miRNA:   3'- -CCaGACGUGG----UGUUGGuGGGu-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 102091 0.76 0.399979
Target:  5'- cGUCUGgAUgGCGaaGCCGCCCGCCUGCa -3'
miRNA:   3'- cCAGACgUGgUGU--UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 25673 0.75 0.440659
Target:  5'- gGGUCUGgagagcagcggcccCACCACAACCACCUugCUu- -3'
miRNA:   3'- -CCAGAC--------------GUGGUGUUGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 120046 0.74 0.474281
Target:  5'- gGGUCUGCgggcugggcgcggacGCCGC-GCC-CCaCACCCACa -3'
miRNA:   3'- -CCAGACG---------------UGGUGuUGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 158063 0.72 0.586697
Target:  5'- uGGUgUGCACCucCAcccugGCCACCUGCCC-Cg -3'
miRNA:   3'- -CCAgACGUGGu-GU-----UGGUGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 77046 0.71 0.667172
Target:  5'- --gCUGCGCgGCGGCC-CUCAUCCGCu -3'
miRNA:   3'- ccaGACGUGgUGUUGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 42733 0.72 0.626906
Target:  5'- cGGUCcgggcGCGCCGgugGCCACCUGCCCAa -3'
miRNA:   3'- -CCAGa----CGUGGUgu-UGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 76959 0.73 0.55685
Target:  5'- aGGacUCUGCggugGCCAUcGCCACCCugCUGCa -3'
miRNA:   3'- -CC--AGACG----UGGUGuUGGUGGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15804 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 72931 0.71 0.636985
Target:  5'- cGUCUGCcccaccagcuugGCCcucucgugggugGCGACCGCCUGCCCAg -3'
miRNA:   3'- cCAGACG------------UGG------------UGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 142925 0.8 0.238133
Target:  5'- uGGUCUcggccGCGCCGCcgccGCCGCCCGCUCGCc -3'
miRNA:   3'- -CCAGA-----CGUGGUGu---UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 35483 0.74 0.489214
Target:  5'- cGUCcccgGC-CCGCc-CCGCCCACCCGCg -3'
miRNA:   3'- cCAGa---CGuGGUGuuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 110916 0.71 0.647062
Target:  5'- --gCUGCugCgGCAGCCugGCCUGCCCGCu -3'
miRNA:   3'- ccaGACGugG-UGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93144 0.71 0.687171
Target:  5'- cGGUCUuuGCCGcCAGCCcccggauCCUGCCCACu -3'
miRNA:   3'- -CCAGAcgUGGU-GUUGGu------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 31008 0.76 0.38341
Target:  5'- cGGUCaGCACgCGCAgcGCCGCCCcguccCCCGCg -3'
miRNA:   3'- -CCAGaCGUG-GUGU--UGGUGGGu----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 70198 0.75 0.425671
Target:  5'- gGGUCUGUucuCUAUAGCCACCgGCuCCAUg -3'
miRNA:   3'- -CCAGACGu--GGUGUUGGUGGgUG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.