miRNA display CGI


Results 61 - 80 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 1712 0.67 0.873317
Target:  5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3'
miRNA:   3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 178501 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11794 0.67 0.873317
Target:  5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3'
miRNA:   3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 155952 0.67 0.873317
Target:  5'- cGG-CUGCACCG-AGCC-CCUGgCCGCg -3'
miRNA:   3'- -CCaGACGUGGUgUUGGuGGGUgGGUG- -5'
3592 5' -56.7 NC_001650.1 + 78840 0.67 0.873317
Target:  5'- cGGgCaGCACCACGugggcuagucuGCCGCagcggCGCCCGCa -3'
miRNA:   3'- -CCaGaCGUGGUGU-----------UGGUGg----GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 172067 0.67 0.873317
Target:  5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3'
miRNA:   3'- cCAGACGUGGUGU---UGGUGGGugGGug -5'
3592 5' -56.7 NC_001650.1 + 8463 0.67 0.866041
Target:  5'- ---aUGgACCACccacacuuauCCACCCACCCAUc -3'
miRNA:   3'- ccagACgUGGUGuu--------GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 175170 0.67 0.866041
Target:  5'- ---aUGgACCACccacacuuauCCACCCACCCAUc -3'
miRNA:   3'- ccagACgUGGUGuu--------GGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 111272 0.67 0.866041
Target:  5'- gGGcCUcGC-CCGCAGCaguGCCCGCCC-Ca -3'
miRNA:   3'- -CCaGA-CGuGGUGUUGg--UGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 115344 0.67 0.866041
Target:  5'- --aCUGCACCucccuCAccuCCuggucCCCGCCCGCg -3'
miRNA:   3'- ccaGACGUGGu----GUu--GGu----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 182232 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 66039 0.67 0.866041
Target:  5'- -cUUUGacaACCAgAACCugCaCACCCACu -3'
miRNA:   3'- ccAGACg--UGGUgUUGGugG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15525 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 112651 0.67 0.863818
Target:  5'- --aUUGCcCCACcuGACCACCCaugaccccccaacaACCCACu -3'
miRNA:   3'- ccaGACGuGGUG--UUGGUGGG--------------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 131890 0.67 0.858561
Target:  5'- cGGUCcugaGCACCuCcACCGCCC-CCCuCa -3'
miRNA:   3'- -CCAGa---CGUGGuGuUGGUGGGuGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 122408 0.67 0.858561
Target:  5'- ----cGCGCUACAACUACCUGUCCGCc -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 159173 0.67 0.858561
Target:  5'- ----gGCACCACGuCCACCCugaACaCCACc -3'
miRNA:   3'- ccagaCGUGGUGUuGGUGGG---UG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 163735 0.67 0.858561
Target:  5'- gGGUCUGgUGCCG-GGCCGCCCcuACCCu- -3'
miRNA:   3'- -CCAGAC-GUGGUgUUGGUGGG--UGGGug -5'
3592 5' -56.7 NC_001650.1 + 57545 0.67 0.857802
Target:  5'- aGG-CgGCGCCACAggcggguggggguGCCACCgGCgCUACg -3'
miRNA:   3'- -CCaGaCGUGGUGU-------------UGGUGGgUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 72678 0.67 0.855513
Target:  5'- gGGUCaagacGCGCCGgGACCcugggcaggcgguCgCCACCCACg -3'
miRNA:   3'- -CCAGa----CGUGGUgUUGGu------------G-GGUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.