miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3593 3' -55.6 NC_001650.1 + 114907 0.73 0.570564
Target:  5'- -gAGGGAGGUGgccgGGU-UGCCCUCCACc -3'
miRNA:   3'- aaUCUCUCCAC----UCAuACGGGGGGUGu -5'
3593 3' -55.6 NC_001650.1 + 49659 0.66 0.901973
Target:  5'- ---uGGGGGUGGGccuUGCCCCuCUACGc -3'
miRNA:   3'- aaucUCUCCACUCau-ACGGGG-GGUGU- -5'
3593 3' -55.6 NC_001650.1 + 156526 0.66 0.901973
Target:  5'- --cGGGGGGcGAGUGUGagggaCCCCCGu- -3'
miRNA:   3'- aauCUCUCCaCUCAUACg----GGGGGUgu -5'
3593 3' -55.6 NC_001650.1 + 32012 0.66 0.902611
Target:  5'- -gGGAGGGGguguaccugaccuacGAGgggacUGCCCCCCugGu -3'
miRNA:   3'- aaUCUCUCCa--------------CUCau---ACGGGGGGugU- -5'
3593 3' -55.6 NC_001650.1 + 11109 0.66 0.914279
Target:  5'- gUGGuGAGGUcGGGUAUGCUaaugggaCCACAg -3'
miRNA:   3'- aAUCuCUCCA-CUCAUACGGgg-----GGUGU- -5'
3593 3' -55.6 NC_001650.1 + 177816 0.66 0.914279
Target:  5'- gUGGuGAGGUcGGGUAUGCUaaugggaCCACAg -3'
miRNA:   3'- aAUCuCUCCA-CUCAUACGGgg-----GGUGU- -5'
3593 3' -55.6 NC_001650.1 + 8354 0.66 0.925619
Target:  5'- ---cGGGGGUGA--AUGCcacCCCCCACAc -3'
miRNA:   3'- aaucUCUCCACUcaUACG---GGGGGUGU- -5'
3593 3' -55.6 NC_001650.1 + 175061 0.66 0.925619
Target:  5'- ---cGGGGGUGA--AUGCcacCCCCCACAc -3'
miRNA:   3'- aaucUCUCCACUcaUACG---GGGGGUGU- -5'
3593 3' -55.6 NC_001650.1 + 37623 0.66 0.930404
Target:  5'- gUGGAgGAGGUGugcgcgcGGgg-GCCCCCCGuCGg -3'
miRNA:   3'- aAUCU-CUCCAC-------UCauaCGGGGGGU-GU- -5'
3593 3' -55.6 NC_001650.1 + 172641 0.67 0.895463
Target:  5'- aUUGGccauGGGGUGAGUGggcaGUCCCCCu-- -3'
miRNA:   3'- -AAUCu---CUCCACUCAUa---CGGGGGGugu -5'
3593 3' -55.6 NC_001650.1 + 157752 0.67 0.895463
Target:  5'- aUAGGGGGGcGcGUccgGCCCuCCCACGg -3'
miRNA:   3'- aAUCUCUCCaCuCAua-CGGG-GGGUGU- -5'
3593 3' -55.6 NC_001650.1 + 7610 0.71 0.693922
Target:  5'- -gGGuGAGGUGGGUG-GCCCgCCAUu -3'
miRNA:   3'- aaUCuCUCCACUCAUaCGGGgGGUGu -5'
3593 3' -55.6 NC_001650.1 + 174317 0.71 0.693922
Target:  5'- -gGGuGAGGUGGGUG-GCCCgCCAUu -3'
miRNA:   3'- aaUCuCUCCACUCAUaCGGGgGGUGu -5'
3593 3' -55.6 NC_001650.1 + 36079 0.7 0.734098
Target:  5'- aUAGAGGGGgugGAGguguaccaGUGCCCCUCGgAg -3'
miRNA:   3'- aAUCUCUCCa--CUCa-------UACGGGGGGUgU- -5'
3593 3' -55.6 NC_001650.1 + 59761 0.69 0.763316
Target:  5'- ---cGGGGGcGAGgc-GCCCCCCACGg -3'
miRNA:   3'- aaucUCUCCaCUCauaCGGGGGGUGU- -5'
3593 3' -55.6 NC_001650.1 + 82272 0.69 0.772831
Target:  5'- --cGAGGGGgucccggagGAGggaGCCCCCCGCu -3'
miRNA:   3'- aauCUCUCCa--------CUCauaCGGGGGGUGu -5'
3593 3' -55.6 NC_001650.1 + 109594 0.69 0.791468
Target:  5'- -gGGAGGGGgucuccGAGgaaGCCCCCCAa- -3'
miRNA:   3'- aaUCUCUCCa-----CUCauaCGGGGGGUgu -5'
3593 3' -55.6 NC_001650.1 + 17977 0.67 0.867123
Target:  5'- ---cGGGGGUGAagaagagcGCCCCCCACGu -3'
miRNA:   3'- aaucUCUCCACUcaua----CGGGGGGUGU- -5'
3593 3' -55.6 NC_001650.1 + 67519 0.67 0.874544
Target:  5'- gUGGAGGGG-GAGgcgacggAUGCCCCgaGCGg -3'
miRNA:   3'- aAUCUCUCCaCUCa------UACGGGGggUGU- -5'
3593 3' -55.6 NC_001650.1 + 165984 0.66 0.92398
Target:  5'- gUGGGGGGGUGuAGgagaugucccacagGCCCCCCu-- -3'
miRNA:   3'- aAUCUCUCCAC-UCaua-----------CGGGGGGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.