Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3593 | 3' | -55.6 | NC_001650.1 | + | 4078 | 0.69 | 0.807743 |
Target: 5'- --uGAGAGGgGAGUAgggggcuuccuaGCCCCCUACc -3' miRNA: 3'- aauCUCUCCaCUCAUa-----------CGGGGGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 7610 | 0.71 | 0.693922 |
Target: 5'- -gGGuGAGGUGGGUG-GCCCgCCAUu -3' miRNA: 3'- aaUCuCUCCACUCAUaCGGGgGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 8354 | 0.66 | 0.925619 |
Target: 5'- ---cGGGGGUGA--AUGCcacCCCCCACAc -3' miRNA: 3'- aaucUCUCCACUcaUACG---GGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 11109 | 0.66 | 0.914279 |
Target: 5'- gUGGuGAGGUcGGGUAUGCUaaugggaCCACAg -3' miRNA: 3'- aAUCuCUCCA-CUCAUACGGgg-----GGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 13998 | 0.71 | 0.663205 |
Target: 5'- ---cAGuGGUGGGUG-GUCCCCCGCAg -3' miRNA: 3'- aaucUCuCCACUCAUaCGGGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 17977 | 0.67 | 0.867123 |
Target: 5'- ---cGGGGGUGAagaagagcGCCCCCCACGu -3' miRNA: 3'- aaucUCUCCACUcaua----CGGGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 18356 | 1.06 | 0.00509 |
Target: 5'- cUUAGAGAGGUGAGUAUGCCCCCCACAc -3' miRNA: 3'- -AAUCUCUCCACUCAUACGGGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 26768 | 0.67 | 0.895463 |
Target: 5'- -gAGAGcAGGggcagcGAGaacaccUGCCCCCCGCGu -3' miRNA: 3'- aaUCUC-UCCa-----CUCau----ACGGGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 32012 | 0.66 | 0.902611 |
Target: 5'- -gGGAGGGGguguaccugaccuacGAGgggacUGCCCCCCugGu -3' miRNA: 3'- aaUCUCUCCa--------------CUCau---ACGGGGGGugU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 36079 | 0.7 | 0.734098 |
Target: 5'- aUAGAGGGGgugGAGguguaccaGUGCCCCUCGgAg -3' miRNA: 3'- aAUCUCUCCa--CUCa-------UACGGGGGGUgU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 37623 | 0.66 | 0.930404 |
Target: 5'- gUGGAgGAGGUGugcgcgcGGgg-GCCCCCCGuCGg -3' miRNA: 3'- aAUCU-CUCCAC-------UCauaCGGGGGGU-GU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 49659 | 0.66 | 0.901973 |
Target: 5'- ---uGGGGGUGGGccuUGCCCCuCUACGc -3' miRNA: 3'- aaucUCUCCACUCau-ACGGGG-GGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 59761 | 0.69 | 0.763316 |
Target: 5'- ---cGGGGGcGAGgc-GCCCCCCACGg -3' miRNA: 3'- aaucUCUCCaCUCauaCGGGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 67519 | 0.67 | 0.874544 |
Target: 5'- gUGGAGGGG-GAGgcgacggAUGCCCCgaGCGg -3' miRNA: 3'- aAUCUCUCCaCUCa------UACGGGGggUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 82272 | 0.69 | 0.772831 |
Target: 5'- --cGAGGGGgucccggagGAGggaGCCCCCCGCu -3' miRNA: 3'- aauCUCUCCa--------CUCauaCGGGGGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 89330 | 0.67 | 0.888718 |
Target: 5'- -aAGGGcGGGUGGuGUAgcaggaUGCCCCCCGg- -3' miRNA: 3'- aaUCUC-UCCACU-CAU------ACGGGGGGUgu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 91682 | 0.66 | 0.92007 |
Target: 5'- uUUAGGGAGGUGAGUcagGaCCucaCCUCGCu -3' miRNA: 3'- -AAUCUCUCCACUCAua-C-GG---GGGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 93223 | 0.69 | 0.80952 |
Target: 5'- gUGGAGaAGGgGAGgaagggGCCCUCCGCGu -3' miRNA: 3'- aAUCUC-UCCaCUCaua---CGGGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 109594 | 0.69 | 0.791468 |
Target: 5'- -gGGAGGGGgucuccGAGgaaGCCCCCCAa- -3' miRNA: 3'- aaUCUCUCCa-----CUCauaCGGGGGGUgu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 114907 | 0.73 | 0.570564 |
Target: 5'- -gAGGGAGGUGgccgGGU-UGCCCUCCACc -3' miRNA: 3'- aaUCUCUCCAC----UCAuACGGGGGGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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