Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3593 | 3' | -55.6 | NC_001650.1 | + | 127974 | 0.7 | 0.74394 |
Target: 5'- cUUGGAGGGGUGGGccgggcccGUGaCCaCCCCGCu -3' miRNA: 3'- -AAUCUCUCCACUCa-------UAC-GG-GGGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 133952 | 0.67 | 0.893464 |
Target: 5'- cUUAGAGcucGGUGuuGUGUuuggggugucuggcGCCCCCCGCu -3' miRNA: 3'- -AAUCUCu--CCACu-CAUA--------------CGGGGGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 136102 | 0.66 | 0.908246 |
Target: 5'- -gGGAGGGGcGGGcagagGCCCCCCu-- -3' miRNA: 3'- aaUCUCUCCaCUCaua--CGGGGGGugu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 136591 | 0.67 | 0.888718 |
Target: 5'- -cAGGGGGG-GAG-GUGCCCagaguggguggCCCACAu -3' miRNA: 3'- aaUCUCUCCaCUCaUACGGG-----------GGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 138228 | 0.66 | 0.914279 |
Target: 5'- cUGGAgGAGGUGA---UGCCCCaggccgagaaCCACAg -3' miRNA: 3'- aAUCU-CUCCACUcauACGGGG----------GGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 141899 | 0.68 | 0.818305 |
Target: 5'- gUUGGGGGGGUGAGgagGaCCgCCGCAc -3' miRNA: 3'- -AAUCUCUCCACUCauaCgGGgGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 155616 | 0.68 | 0.835349 |
Target: 5'- -aGGAGAGGUGGGgagggGCCUCaCCGa- -3' miRNA: 3'- aaUCUCUCCACUCaua--CGGGG-GGUgu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 156526 | 0.66 | 0.901973 |
Target: 5'- --cGGGGGGcGAGUGUGagggaCCCCCGu- -3' miRNA: 3'- aauCUCUCCaCUCAUACg----GGGGGUgu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 157752 | 0.67 | 0.895463 |
Target: 5'- aUAGGGGGGcGcGUccgGCCCuCCCACGg -3' miRNA: 3'- aAUCUCUCCaCuCAua-CGGG-GGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 165984 | 0.66 | 0.92398 |
Target: 5'- gUGGGGGGGUGuAGgagaugucccacagGCCCCCCu-- -3' miRNA: 3'- aAUCUCUCCAC-UCaua-----------CGGGGGGugu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 170785 | 0.69 | 0.807743 |
Target: 5'- --uGAGAGGgGAGUAgggggcuuccuaGCCCCCUACc -3' miRNA: 3'- aauCUCUCCaCUCAUa-----------CGGGGGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 172641 | 0.67 | 0.895463 |
Target: 5'- aUUGGccauGGGGUGAGUGggcaGUCCCCCu-- -3' miRNA: 3'- -AAUCu---CUCCACUCAUa---CGGGGGGugu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 174317 | 0.71 | 0.693922 |
Target: 5'- -gGGuGAGGUGGGUG-GCCCgCCAUu -3' miRNA: 3'- aaUCuCUCCACUCAUaCGGGgGGUGu -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 175061 | 0.66 | 0.925619 |
Target: 5'- ---cGGGGGUGA--AUGCcacCCCCCACAc -3' miRNA: 3'- aaucUCUCCACUcaUACG---GGGGGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 177816 | 0.66 | 0.914279 |
Target: 5'- gUGGuGAGGUcGGGUAUGCUaaugggaCCACAg -3' miRNA: 3'- aAUCuCUCCA-CUCAUACGGgg-----GGUGU- -5' |
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3593 | 3' | -55.6 | NC_001650.1 | + | 180705 | 0.71 | 0.663205 |
Target: 5'- ---cAGuGGUGGGUG-GUCCCCCGCAg -3' miRNA: 3'- aaucUCuCCACUCAUaCGGGGGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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