miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3593 5' -56.7 NC_001650.1 + 18319 1.09 0.002869
Target:  5'- cGCCGAGGGAGGCAUUCUUCCCCCAUAu -3'
miRNA:   3'- -CGGCUCCCUCCGUAAGAAGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 157459 0.74 0.457516
Target:  5'- cCCGAGGG-GGCGgccuucucucuucccUUCgagUCCCCCGUGa -3'
miRNA:   3'- cGGCUCCCuCCGU---------------AAGa--AGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 61326 0.72 0.578237
Target:  5'- cGgCGGGGGAGGCGagCUccucaucaccaucUCCCCCGa- -3'
miRNA:   3'- -CgGCUCCCUCCGUaaGA-------------AGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 68889 0.72 0.593338
Target:  5'- aGCCGGGGGAgagacggcgcccccuGGCAgacagCUUCgCCCCGg- -3'
miRNA:   3'- -CGGCUCCCU---------------CCGUaa---GAAG-GGGGUau -5'
3593 5' -56.7 NC_001650.1 + 8561 0.72 0.609513
Target:  5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3'
miRNA:   3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 175268 0.72 0.609513
Target:  5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3'
miRNA:   3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 89746 0.72 0.609513
Target:  5'- uCCGAGGGGGGC--UCUgCCUCCGa- -3'
miRNA:   3'- cGGCUCCCUCCGuaAGAaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 68678 0.71 0.619646
Target:  5'- uGCC-AGGGGGcGCcgUCUcUCCCCCGg- -3'
miRNA:   3'- -CGGcUCCCUC-CGuaAGA-AGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 108717 0.71 0.650071
Target:  5'- gGUCGcGGGGGGCGUcaaagacagccUCUUCCCCgAg- -3'
miRNA:   3'- -CGGCuCCCUCCGUA-----------AGAAGGGGgUau -5'
3593 5' -56.7 NC_001650.1 + 287 0.7 0.680368
Target:  5'- cCCGAGGGGGGguUUCccgggCCCCUc-- -3'
miRNA:   3'- cGGCUCCCUCCguAAGaa---GGGGGuau -5'
3593 5' -56.7 NC_001650.1 + 166994 0.7 0.680368
Target:  5'- cCCGAGGGGGGguUUCccgggCCCCUc-- -3'
miRNA:   3'- cGGCUCCCUCCguAAGaa---GGGGGuau -5'
3593 5' -56.7 NC_001650.1 + 7258 0.7 0.729967
Target:  5'- gGCCGAGGGugcaguGGGUAg----CCCCCAUu -3'
miRNA:   3'- -CGGCUCCC------UCCGUaagaaGGGGGUAu -5'
3593 5' -56.7 NC_001650.1 + 173965 0.7 0.729967
Target:  5'- gGCCGAGGGugcaguGGGUAg----CCCCCAUu -3'
miRNA:   3'- -CGGCUCCC------UCCGUaagaaGGGGGUAu -5'
3593 5' -56.7 NC_001650.1 + 18188 0.69 0.758799
Target:  5'- -aCGuGGGGGGCGcucUUCUUCaCCCCcgGg -3'
miRNA:   3'- cgGCuCCCUCCGU---AAGAAG-GGGGuaU- -5'
3593 5' -56.7 NC_001650.1 + 68471 0.69 0.758799
Target:  5'- cGCCGGGGGAGGagcgacgUCUUCUggaCCAc- -3'
miRNA:   3'- -CGGCUCCCUCCgua----AGAAGGg--GGUau -5'
3593 5' -56.7 NC_001650.1 + 58757 0.68 0.786641
Target:  5'- gGCCaAGGGGGGCGaca--CCCCCAUc -3'
miRNA:   3'- -CGGcUCCCUCCGUaagaaGGGGGUAu -5'
3593 5' -56.7 NC_001650.1 + 158550 0.68 0.786641
Target:  5'- cGCCGAGGGGGGCGccUUUgUCaugagggaCCCGg- -3'
miRNA:   3'- -CGGCUCCCUCCGU--AAGaAGg-------GGGUau -5'
3593 5' -56.7 NC_001650.1 + 72959 0.68 0.795661
Target:  5'- -aCGAGGaGuGGCAcaagUCCCCCAUGg -3'
miRNA:   3'- cgGCUCC-CuCCGUaagaAGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 120882 0.68 0.795661
Target:  5'- cGCUGGGGGcGGCGcgCgacaacgCCCCCAa- -3'
miRNA:   3'- -CGGCUCCCuCCGUaaGaa-----GGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 58181 0.68 0.804535
Target:  5'- uGCCGuGGGAGGg--UCUUCgccgCCCCGa- -3'
miRNA:   3'- -CGGCuCCCUCCguaAGAAG----GGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.