Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3593 | 5' | -56.7 | NC_001650.1 | + | 68678 | 0.71 | 0.619646 |
Target: 5'- uGCC-AGGGGGcGCcgUCUcUCCCCCGg- -3' miRNA: 3'- -CGGcUCCCUC-CGuaAGA-AGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 157289 | 0.66 | 0.903306 |
Target: 5'- cGCCu-GGGGGGCAccUCcccgCCCCCGc- -3' miRNA: 3'- -CGGcuCCCUCCGUa-AGaa--GGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 22838 | 0.66 | 0.899527 |
Target: 5'- cCCGAG-GAGGCGgucUCUgagcugagccacuucUCCCCCGg- -3' miRNA: 3'- cGGCUCcCUCCGUa--AGA---------------AGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 62090 | 0.66 | 0.896962 |
Target: 5'- gGCUGAGGGcGGUgccgGUuucuccUCUUCCUCCAc- -3' miRNA: 3'- -CGGCUCCCuCCG----UA------AGAAGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 48250 | 0.66 | 0.883598 |
Target: 5'- cUCGAGGGGGGCug-CUUccaggcggcuagCCCCCu-- -3' miRNA: 3'- cGGCUCCCUCCGuaaGAA------------GGGGGuau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 53429 | 0.67 | 0.861923 |
Target: 5'- gGUCaGAGGGGGGCGUguagcUCUUCUgCCu-- -3' miRNA: 3'- -CGG-CUCCCUCCGUA-----AGAAGGgGGuau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 58837 | 0.67 | 0.838417 |
Target: 5'- gGCCcGGGaGAGGCAgaugagCCCCCAc- -3' miRNA: 3'- -CGGcUCC-CUCCGUaagaa-GGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 129142 | 0.68 | 0.830204 |
Target: 5'- gGCCGAGgacacGGGGGCGgcccUCUUCgCCCu-- -3' miRNA: 3'- -CGGCUC-----CCUCCGUa---AGAAGgGGGuau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 21807 | 0.68 | 0.812391 |
Target: 5'- gGCCGAggccccggggaggGGGAGGCGacca-CCCCCAUc -3' miRNA: 3'- -CGGCU-------------CCCUCCGUaagaaGGGGGUAu -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 108717 | 0.71 | 0.650071 |
Target: 5'- gGUCGcGGGGGGCGUcaaagacagccUCUUCCCCgAg- -3' miRNA: 3'- -CGGCuCCCUCCGUA-----------AGAAGGGGgUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 7258 | 0.7 | 0.729967 |
Target: 5'- gGCCGAGGGugcaguGGGUAg----CCCCCAUu -3' miRNA: 3'- -CGGCUCCC------UCCGUaagaaGGGGGUAu -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 173965 | 0.7 | 0.729967 |
Target: 5'- gGCCGAGGGugcaguGGGUAg----CCCCCAUu -3' miRNA: 3'- -CGGCUCCC------UCCGUaagaaGGGGGUAu -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 120882 | 0.68 | 0.795661 |
Target: 5'- cGCUGGGGGcGGCGcgCgacaacgCCCCCAa- -3' miRNA: 3'- -CGGCUCCCuCCGUaaGaa-----GGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 72959 | 0.68 | 0.795661 |
Target: 5'- -aCGAGGaGuGGCAcaagUCCCCCAUGg -3' miRNA: 3'- cgGCUCC-CuCCGUaagaAGGGGGUAU- -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 58181 | 0.68 | 0.804535 |
Target: 5'- uGCCGuGGGAGGg--UCUUCgccgCCCCGa- -3' miRNA: 3'- -CGGCuCCCUCCguaAGAAG----GGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 32146 | 0.66 | 0.883598 |
Target: 5'- gGCCGAGagcagcgaGAGGC--UUUUCUCCCAUAc -3' miRNA: 3'- -CGGCUCc-------CUCCGuaAGAAGGGGGUAU- -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 157459 | 0.74 | 0.457516 |
Target: 5'- cCCGAGGG-GGCGgccuucucucuucccUUCgagUCCCCCGUGa -3' miRNA: 3'- cGGCUCCCuCCGU---------------AAGa--AGGGGGUAU- -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 61326 | 0.72 | 0.578237 |
Target: 5'- cGgCGGGGGAGGCGagCUccucaucaccaucUCCCCCGa- -3' miRNA: 3'- -CgGCUCCCUCCGUaaGA-------------AGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 68889 | 0.72 | 0.593338 |
Target: 5'- aGCCGGGGGAgagacggcgcccccuGGCAgacagCUUCgCCCCGg- -3' miRNA: 3'- -CGGCUCCCU---------------CCGUaa---GAAG-GGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 175268 | 0.72 | 0.609513 |
Target: 5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3' miRNA: 3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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