miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3593 5' -56.7 NC_001650.1 + 184083 0.67 0.861923
Target:  5'- cUCGGGGGuGGCcaUCUcagugggaagCCCCCAUAa -3'
miRNA:   3'- cGGCUCCCuCCGuaAGAa---------GGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 141230 0.67 0.861923
Target:  5'- gGUCaGAGGGGGGCGUguagcUCUUCUgCCu-- -3'
miRNA:   3'- -CGG-CUCCCUCCGUA-----AGAAGGgGGuau -5'
3593 5' -56.7 NC_001650.1 + 17376 0.67 0.861923
Target:  5'- cUCGGGGGuGGCcaUCUcagugggaagCCCCCAUAa -3'
miRNA:   3'- cGGCUCCCuCCGuaAGAa---------GGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 30413 0.67 0.861923
Target:  5'- cCCGAGaGGAGGuCcgUCaggaCCCCCAg- -3'
miRNA:   3'- cGGCUC-CCUCC-GuaAGaa--GGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 18188 0.69 0.758799
Target:  5'- -aCGuGGGGGGCGcucUUCUUCaCCCCcgGg -3'
miRNA:   3'- cgGCuCCCUCCGU---AAGAAG-GGGGuaU- -5'
3593 5' -56.7 NC_001650.1 + 68471 0.69 0.758799
Target:  5'- cGCCGGGGGAGGagcgacgUCUUCUggaCCAc- -3'
miRNA:   3'- -CGGCUCCCUCCgua----AGAAGGg--GGUau -5'
3593 5' -56.7 NC_001650.1 + 18319 1.09 0.002869
Target:  5'- cGCCGAGGGAGGCAUUCUUCCCCCAUAu -3'
miRNA:   3'- -CGGCUCCCUCCGUAAGAAGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 157459 0.74 0.457516
Target:  5'- cCCGAGGG-GGCGgccuucucucuucccUUCgagUCCCCCGUGa -3'
miRNA:   3'- cGGCUCCCuCCGU---------------AAGa--AGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 61326 0.72 0.578237
Target:  5'- cGgCGGGGGAGGCGagCUccucaucaccaucUCCCCCGa- -3'
miRNA:   3'- -CgGCUCCCUCCGUaaGA-------------AGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 68889 0.72 0.593338
Target:  5'- aGCCGGGGGAgagacggcgcccccuGGCAgacagCUUCgCCCCGg- -3'
miRNA:   3'- -CGGCUCCCU---------------CCGUaa---GAAG-GGGGUau -5'
3593 5' -56.7 NC_001650.1 + 175268 0.72 0.609513
Target:  5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3'
miRNA:   3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 8561 0.72 0.609513
Target:  5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3'
miRNA:   3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 89746 0.72 0.609513
Target:  5'- uCCGAGGGGGGC--UCUgCCUCCGa- -3'
miRNA:   3'- cGGCUCCCUCCGuaAGAaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 166994 0.7 0.680368
Target:  5'- cCCGAGGGGGGguUUCccgggCCCCUc-- -3'
miRNA:   3'- cGGCUCCCUCCguAAGaa---GGGGGuau -5'
3593 5' -56.7 NC_001650.1 + 287 0.7 0.680368
Target:  5'- cCCGAGGGGGGguUUCccgggCCCCUc-- -3'
miRNA:   3'- cGGCUCCCUCCguAAGaa---GGGGGuau -5'
3593 5' -56.7 NC_001650.1 + 32146 0.66 0.883598
Target:  5'- gGCCGAGagcagcgaGAGGC--UUUUCUCCCAUAc -3'
miRNA:   3'- -CGGCUCc-------CUCCGuaAGAAGGGGGUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.