Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3593 | 5' | -56.7 | NC_001650.1 | + | 58757 | 0.68 | 0.786641 |
Target: 5'- gGCCaAGGGGGGCGaca--CCCCCAUc -3' miRNA: 3'- -CGGcUCCCUCCGUaagaaGGGGGUAu -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 68471 | 0.69 | 0.758799 |
Target: 5'- cGCCGGGGGAGGagcgacgUCUUCUggaCCAc- -3' miRNA: 3'- -CGGCUCCCUCCgua----AGAAGGg--GGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 18188 | 0.69 | 0.758799 |
Target: 5'- -aCGuGGGGGGCGcucUUCUUCaCCCCcgGg -3' miRNA: 3'- cgGCuCCCUCCGU---AAGAAG-GGGGuaU- -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 173965 | 0.7 | 0.729967 |
Target: 5'- gGCCGAGGGugcaguGGGUAg----CCCCCAUu -3' miRNA: 3'- -CGGCUCCC------UCCGUaagaaGGGGGUAu -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 7258 | 0.7 | 0.729967 |
Target: 5'- gGCCGAGGGugcaguGGGUAg----CCCCCAUu -3' miRNA: 3'- -CGGCUCCC------UCCGUaagaaGGGGGUAu -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 287 | 0.7 | 0.680368 |
Target: 5'- cCCGAGGGGGGguUUCccgggCCCCUc-- -3' miRNA: 3'- cGGCUCCCUCCguAAGaa---GGGGGuau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 166994 | 0.7 | 0.680368 |
Target: 5'- cCCGAGGGGGGguUUCccgggCCCCUc-- -3' miRNA: 3'- cGGCUCCCUCCguAAGaa---GGGGGuau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 108717 | 0.71 | 0.650071 |
Target: 5'- gGUCGcGGGGGGCGUcaaagacagccUCUUCCCCgAg- -3' miRNA: 3'- -CGGCuCCCUCCGUA-----------AGAAGGGGgUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 68678 | 0.71 | 0.619646 |
Target: 5'- uGCC-AGGGGGcGCcgUCUcUCCCCCGg- -3' miRNA: 3'- -CGGcUCCCUC-CGuaAGA-AGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 89746 | 0.72 | 0.609513 |
Target: 5'- uCCGAGGGGGGC--UCUgCCUCCGa- -3' miRNA: 3'- cGGCUCCCUCCGuaAGAaGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 8561 | 0.72 | 0.609513 |
Target: 5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3' miRNA: 3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 175268 | 0.72 | 0.609513 |
Target: 5'- uGUgGGGGGuGGCAUUCa-CCCCCGg- -3' miRNA: 3'- -CGgCUCCCuCCGUAAGaaGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 68889 | 0.72 | 0.593338 |
Target: 5'- aGCCGGGGGAgagacggcgcccccuGGCAgacagCUUCgCCCCGg- -3' miRNA: 3'- -CGGCUCCCU---------------CCGUaa---GAAG-GGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 61326 | 0.72 | 0.578237 |
Target: 5'- cGgCGGGGGAGGCGagCUccucaucaccaucUCCCCCGa- -3' miRNA: 3'- -CgGCUCCCUCCGUaaGA-------------AGGGGGUau -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 157459 | 0.74 | 0.457516 |
Target: 5'- cCCGAGGG-GGCGgccuucucucuucccUUCgagUCCCCCGUGa -3' miRNA: 3'- cGGCUCCCuCCGU---------------AAGa--AGGGGGUAU- -5' |
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3593 | 5' | -56.7 | NC_001650.1 | + | 18319 | 1.09 | 0.002869 |
Target: 5'- cGCCGAGGGAGGCAUUCUUCCCCCAUAu -3' miRNA: 3'- -CGGCUCCCUCCGUAAGAAGGGGGUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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