Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3594 | 3' | -50.9 | NC_001650.1 | + | 5007 | 0.68 | 0.982163 |
Target: 5'- uGGGUGGgcUCCGGGggGCCUCCg--- -3' miRNA: 3'- uCCCACUauAGGUUUa-CGGGGGaaug -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 5630 | 0.67 | 0.985952 |
Target: 5'- cAGGGUaGAg--UgGGcgGCCCCCUUAg -3' miRNA: 3'- -UCCCA-CUauaGgUUuaCGGGGGAAUg -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 7846 | 0.72 | 0.889076 |
Target: 5'- uGGGUGcAUGgcCCGAccGCCCCCUaUGCa -3' miRNA: 3'- uCCCAC-UAUa-GGUUuaCGGGGGA-AUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 8134 | 0.73 | 0.842744 |
Target: 5'- uGGGG-GAUGUCCAcuaGCCCCUcUGCc -3' miRNA: 3'- -UCCCaCUAUAGGUuuaCGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 14920 | 0.67 | 0.985952 |
Target: 5'- gGGGGUgcuGAUGUaaccgCAGA-GCCCCCggGCg -3' miRNA: 3'- -UCCCA---CUAUAg----GUUUaCGGGGGaaUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 18944 | 1.11 | 0.006701 |
Target: 5'- gAGGGUGAUAUCCAAAUGCCCCCUUACa -3' miRNA: 3'- -UCCCACUAUAGGUUUACGGGGGAAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 22025 | 0.66 | 0.993718 |
Target: 5'- gGGGGUGGUcgCCu----CCCCCUc-- -3' miRNA: 3'- -UCCCACUAuaGGuuuacGGGGGAaug -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 36084 | 0.67 | 0.990441 |
Target: 5'- gGGGGUGGaggUGUaCC-AGUGCCCCUc--- -3' miRNA: 3'- -UCCCACU---AUA-GGuUUACGGGGGaaug -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 38147 | 0.66 | 0.991656 |
Target: 5'- cGGauguGUGGUGUCUAuAGUGCCCCaaUACc -3' miRNA: 3'- uCC----CACUAUAGGU-UUACGGGGgaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 49660 | 0.72 | 0.889076 |
Target: 5'- gGGGGUGGg--CCu--UGCCCCUcUACg -3' miRNA: 3'- -UCCCACUauaGGuuuACGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 56625 | 0.66 | 0.995349 |
Target: 5'- cAGGGUGAcc-CCGGGUaagagGCCUCCUaGCu -3' miRNA: 3'- -UCCCACUauaGGUUUA-----CGGGGGAaUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 61734 | 0.66 | 0.995349 |
Target: 5'- cAGGGaGGUGUCUGAAaagguacacGCCCCCgaUGCa -3' miRNA: 3'- -UCCCaCUAUAGGUUUa--------CGGGGGa-AUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 63081 | 0.72 | 0.881929 |
Target: 5'- cGGGUGc--UCCGGA-GCCCCCUgGCc -3' miRNA: 3'- uCCCACuauAGGUUUaCGGGGGAaUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 76448 | 0.7 | 0.942139 |
Target: 5'- cAGGGUGucGUCCGA--GCCgCCCUUGu -3' miRNA: 3'- -UCCCACuaUAGGUUuaCGG-GGGAAUg -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 87036 | 0.69 | 0.959146 |
Target: 5'- cGGGUGcaucuUCCugcuGGUGCCCCUgugGCg -3' miRNA: 3'- uCCCACuau--AGGu---UUACGGGGGaa-UG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 89325 | 0.75 | 0.729973 |
Target: 5'- cGGGUGGUGUagcaGGAUGCCCCCcgguggGCg -3' miRNA: 3'- uCCCACUAUAgg--UUUACGGGGGaa----UG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 100736 | 0.69 | 0.954457 |
Target: 5'- aGGGGUGGUgccggggGUCCGucacggaGAUGCCCUUgUACu -3' miRNA: 3'- -UCCCACUA-------UAGGU-------UUACGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 101758 | 0.68 | 0.980003 |
Target: 5'- gGGGGUGGggGUCCAGAUcagggaccccgaGCCCaggUACa -3' miRNA: 3'- -UCCCACUa-UAGGUUUA------------CGGGggaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 105275 | 0.67 | 0.984144 |
Target: 5'- gGGGGUGGUGgcgguUCCAAgcgGUGUCCCaagaaGCa -3' miRNA: 3'- -UCCCACUAU-----AGGUU---UACGGGGgaa--UG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 105530 | 0.68 | 0.980003 |
Target: 5'- uGGGUGAacccCUAGA-GCCCCCcUACu -3' miRNA: 3'- uCCCACUaua-GGUUUaCGGGGGaAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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