miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3594 3' -50.9 NC_001650.1 + 107584 0.66 0.996025
Target:  5'- cGGGGUGGUAUUCugccugGCCCacaaCUgcUACu -3'
miRNA:   3'- -UCCCACUAUAGGuuua--CGGGg---GA--AUG- -5'
3594 3' -50.9 NC_001650.1 + 109596 0.67 0.985952
Target:  5'- gAGGG-GGUcUCCGAGgaaGCCCCCc--- -3'
miRNA:   3'- -UCCCaCUAuAGGUUUa--CGGGGGaaug -5'
3594 3' -50.9 NC_001650.1 + 5630 0.67 0.985952
Target:  5'- cAGGGUaGAg--UgGGcgGCCCCCUUAg -3'
miRNA:   3'- -UCCCA-CUauaGgUUuaCGGGGGAAUg -5'
3594 3' -50.9 NC_001650.1 + 106133 0.67 0.985952
Target:  5'- gGGGGUGGUGguggacguggUCAAGUggacccacaGCCCCCUgACc -3'
miRNA:   3'- -UCCCACUAUa---------GGUUUA---------CGGGGGAaUG- -5'
3594 3' -50.9 NC_001650.1 + 172337 0.67 0.985952
Target:  5'- cAGGGUaGAg--UgGGcgGCCCCCUUAg -3'
miRNA:   3'- -UCCCA-CUauaGgUUuaCGGGGGAAUg -5'
3594 3' -50.9 NC_001650.1 + 36084 0.67 0.990441
Target:  5'- gGGGGUGGaggUGUaCC-AGUGCCCCUc--- -3'
miRNA:   3'- -UCCCACU---AUA-GGuUUACGGGGGaaug -5'
3594 3' -50.9 NC_001650.1 + 38147 0.66 0.991656
Target:  5'- cGGauguGUGGUGUCUAuAGUGCCCCaaUACc -3'
miRNA:   3'- uCC----CACUAUAGGU-UUACGGGGgaAUG- -5'
3594 3' -50.9 NC_001650.1 + 120503 0.66 0.993718
Target:  5'- gAGGGUGGccUCCuucggggagcAGGUGCCUCUggGCg -3'
miRNA:   3'- -UCCCACUauAGG----------UUUACGGGGGaaUG- -5'
3594 3' -50.9 NC_001650.1 + 56625 0.66 0.995349
Target:  5'- cAGGGUGAcc-CCGGGUaagagGCCUCCUaGCu -3'
miRNA:   3'- -UCCCACUauaGGUUUA-----CGGGGGAaUG- -5'
3594 3' -50.9 NC_001650.1 + 14920 0.67 0.985952
Target:  5'- gGGGGUgcuGAUGUaaccgCAGA-GCCCCCggGCg -3'
miRNA:   3'- -UCCCA---CUAUAg----GUUUaCGGGGGaaUG- -5'
3594 3' -50.9 NC_001650.1 + 171714 0.68 0.982163
Target:  5'- uGGGUGGgcUCCGGGggGCCUCCg--- -3'
miRNA:   3'- uCCCACUauAGGUUUa-CGGGGGaaug -5'
3594 3' -50.9 NC_001650.1 + 5007 0.68 0.982163
Target:  5'- uGGGUGGgcUCCGGGggGCCUCCg--- -3'
miRNA:   3'- uCCCACUauAGGUUUa-CGGGGGaaug -5'
3594 3' -50.9 NC_001650.1 + 49660 0.72 0.889076
Target:  5'- gGGGGUGGg--CCu--UGCCCCUcUACg -3'
miRNA:   3'- -UCCCACUauaGGuuuACGGGGGaAUG- -5'
3594 3' -50.9 NC_001650.1 + 174553 0.72 0.889076
Target:  5'- uGGGUGcAUGgcCCGAccGCCCCCUaUGCa -3'
miRNA:   3'- uCCCAC-UAUa-GGUUuaCGGGGGA-AUG- -5'
3594 3' -50.9 NC_001650.1 + 76448 0.7 0.942139
Target:  5'- cAGGGUGucGUCCGA--GCCgCCCUUGu -3'
miRNA:   3'- -UCCCACuaUAGGUUuaCGG-GGGAAUg -5'
3594 3' -50.9 NC_001650.1 + 100736 0.69 0.954457
Target:  5'- aGGGGUGGUgccggggGUCCGucacggaGAUGCCCUUgUACu -3'
miRNA:   3'- -UCCCACUA-------UAGGU-------UUACGGGGGaAUG- -5'
3594 3' -50.9 NC_001650.1 + 181627 0.68 0.977653
Target:  5'- gGGGGUGcuGUGUaaccgCAGA-GCCCCCggGCg -3'
miRNA:   3'- -UCCCAC--UAUAg----GUUUaCGGGGGaaUG- -5'
3594 3' -50.9 NC_001650.1 + 105530 0.68 0.980003
Target:  5'- uGGGUGAacccCUAGA-GCCCCCcUACu -3'
miRNA:   3'- uCCCACUaua-GGUUUaCGGGGGaAUG- -5'
3594 3' -50.9 NC_001650.1 + 101758 0.68 0.980003
Target:  5'- gGGGGUGGggGUCCAGAUcagggaccccgaGCCCaggUACa -3'
miRNA:   3'- -UCCCACUa-UAGGUUUA------------CGGGggaAUG- -5'
3594 3' -50.9 NC_001650.1 + 157137 0.68 0.981746
Target:  5'- aGGGcGUGAacaUGUCCcacuccaggGCCCCCUccUGCa -3'
miRNA:   3'- -UCC-CACU---AUAGGuuua-----CGGGGGA--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.