miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 57533 0.67 0.988308
Target:  5'- aGGCGgGUGGggGUGC-CAccgGCGCu -3'
miRNA:   3'- cCCGUgCAUCuuCAUGuGUcagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 57852 0.8 0.522252
Target:  5'- cGGCACGUAGGgcaGGUACugGGcCuGCGCg -3'
miRNA:   3'- cCCGUGCAUCU---UCAUGugUCaG-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 57898 0.73 0.853016
Target:  5'- aGGGCGCG-GGAuaguagcccgGGUGCACGGggaaggGCGCg -3'
miRNA:   3'- -CCCGUGCaUCU----------UCAUGUGUCag----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 58707 0.69 0.965283
Target:  5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3'
miRNA:   3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 59620 0.71 0.921009
Target:  5'- uGGGuCACGUAGuuGGUGaggcccuccaGCAG-CGCGCg -3'
miRNA:   3'- -CCC-GUGCAUCu-UCAUg---------UGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 61009 0.67 0.991762
Target:  5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3'
miRNA:   3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 61246 0.7 0.946104
Target:  5'- cGGcCACGUGGAGGgcgguggccUGCucCAGcCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUC---------AUGu-GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 63137 0.7 0.936792
Target:  5'- gGGGCACGUgccagaccccaGGAAcGUguuaaACACaucucugggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCA-----------UCUU-CA-----UGUG---------UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 64705 0.68 0.976708
Target:  5'- uGGGuCGCGUGcuGggGUcugagaACAUAGUUGaCGCu -3'
miRNA:   3'- -CCC-GUGCAU--CuuCA------UGUGUCAGC-GCG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 68114 0.71 0.931774
Target:  5'- cGGGUugGUcaGGAuggGCGCGGUCuCGCu -3'
miRNA:   3'- -CCCGugCA--UCUucaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 69131 0.67 0.988308
Target:  5'- gGGGCgGCGUAGAgcgcuGGUACGuguacCcGcCGCGCa -3'
miRNA:   3'- -CCCG-UGCAUCU-----UCAUGU-----GuCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72206 0.69 0.971404
Target:  5'- aGGCACGccGAGGUGCACG--UGgGCa -3'
miRNA:   3'- cCCGUGCauCUUCAUGUGUcaGCgCG- -5'
3596 5' -51.6 NC_001650.1 + 72841 0.67 0.986777
Target:  5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3'
miRNA:   3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 73013 0.8 0.512388
Target:  5'- aGGGCACGgGGAAGaACAUGGUCuCGCa -3'
miRNA:   3'- -CCCGUGCaUCUUCaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 73203 0.74 0.802174
Target:  5'- aGGgGCGUGGggG--CGCAGgagCGCGCg -3'
miRNA:   3'- cCCgUGCAUCuuCauGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 74249 0.77 0.634221
Target:  5'- aGGuGCugGUuGAAGUGCACGGgggCGUGUg -3'
miRNA:   3'- -CC-CGugCAuCUUCAUGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 78111 0.66 0.996183
Target:  5'- cGGGgGCGac-GAGUGCAUAGUgGUGa -3'
miRNA:   3'- -CCCgUGCaucUUCAUGUGUCAgCGCg -5'
3596 5' -51.6 NC_001650.1 + 80441 0.66 0.994017
Target:  5'- --uCACGUAGAAGgcgGCGCAcGUCcuGCGUc -3'
miRNA:   3'- cccGUGCAUCUUCa--UGUGU-CAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.