miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 1936 0.66 0.992912
Target:  5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3'
miRNA:   3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 2353 0.67 0.991872
Target:  5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3'
miRNA:   3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 11983 0.74 0.819836
Target:  5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3'
miRNA:   3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 15175 0.69 0.958296
Target:  5'- cGGGCGCGgcgcGggGUGuCugGggGUCGCGg -3'
miRNA:   3'- -CCCGUGCau--CuuCAU-GugU--CAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 21598 1.15 0.004106
Target:  5'- uGGGCACGUAGAAGUACACAGUCGCGCg -3'
miRNA:   3'- -CCCGUGCAUCUUCAUGUGUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 22371 0.66 0.994828
Target:  5'- uGGGCAgCGgGGAGG-ACcCGuUCGCGCu -3'
miRNA:   3'- -CCCGU-GCaUCUUCaUGuGUcAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 23297 0.83 0.375947
Target:  5'- -aGCACGUGGAcaGGUGCGCcucgggcagGGUCGCGCa -3'
miRNA:   3'- ccCGUGCAUCU--UCAUGUG---------UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 24183 0.66 0.996183
Target:  5'- gGGGuCGCGcUGGAGGUGcCGCuGUCcucCGCc -3'
miRNA:   3'- -CCC-GUGC-AUCUUCAU-GUGuCAGc--GCG- -5'
3596 5' -51.6 NC_001650.1 + 24354 0.69 0.961901
Target:  5'- gGGGagGCGUGGAGGUcccACuCGGU-GCGCa -3'
miRNA:   3'- -CCCg-UGCAUCUUCA---UGuGUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 28455 0.67 0.986777
Target:  5'- cGGGCACc---GAGUACAaGGUgGUGCa -3'
miRNA:   3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 31161 0.68 0.976708
Target:  5'- uGGcCAUGUGGGAGgaGgAC-GUCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUCa-UgUGuCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 38133 0.66 0.996183
Target:  5'- cGGC-CGgggGGAuguuGUGCugGGcCGCGUa -3'
miRNA:   3'- cCCGuGCa--UCUu---CAUGugUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 39790 0.71 0.931774
Target:  5'- uGGGCcaccGCGUGGAGccuggGCGCAucUCGCGCg -3'
miRNA:   3'- -CCCG----UGCAUCUUca---UGUGUc-AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 40390 0.66 0.994017
Target:  5'- gGGGCGCGaGGGcgAGUcaccaGCGgGGUCaCGCg -3'
miRNA:   3'- -CCCGUGCaUCU--UCA-----UGUgUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 46489 0.66 0.994595
Target:  5'- aGGuCGCG-AGGAGUucaccucggggucaGCcacCGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCaUCUUCA--------------UGu--GUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 46912 0.71 0.915263
Target:  5'- gGGGCugGgggGGggGUuCGCGaUCGCGg -3'
miRNA:   3'- -CCCGugCa--UCuuCAuGUGUcAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 48009 0.66 0.994017
Target:  5'- gGGGC-CGcucAAGUGCAUAGUCacugagaaccugGCGCu -3'
miRNA:   3'- -CCCGuGCaucUUCAUGUGUCAG------------CGCG- -5'
3596 5' -51.6 NC_001650.1 + 50465 0.71 0.921009
Target:  5'- cGGGCGCagAGAGGcGCcccuGUCGCGCa -3'
miRNA:   3'- -CCCGUGcaUCUUCaUGugu-CAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 55063 0.68 0.981251
Target:  5'- aGGUACuaaaucccaGUGGggGUGCAgaaccCAGUaccCGCGCg -3'
miRNA:   3'- cCCGUG---------CAUCuuCAUGU-----GUCA---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 56269 0.67 0.99251
Target:  5'- gGGGUugGgcGAAGgACGgGGgggguggugccuggCGCGCg -3'
miRNA:   3'- -CCCGugCauCUUCaUGUgUCa-------------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.