miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 21598 1.15 0.004106
Target:  5'- uGGGCACGUAGAAGUACACAGUCGCGCg -3'
miRNA:   3'- -CCCGUGCAUCUUCAUGUGUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 23297 0.83 0.375947
Target:  5'- -aGCACGUGGAcaGGUGCGCcucgggcagGGUCGCGCa -3'
miRNA:   3'- ccCGUGCAUCU--UCAUGUG---------UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 73013 0.8 0.512388
Target:  5'- aGGGCACGgGGAAGaACAUGGUCuCGCa -3'
miRNA:   3'- -CCCGUGCaUCUUCaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 57852 0.8 0.522252
Target:  5'- cGGCACGUAGGgcaGGUACugGGcCuGCGCg -3'
miRNA:   3'- cCCGUGCAUCU---UCAUGugUCaG-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 74249 0.77 0.634221
Target:  5'- aGGuGCugGUuGAAGUGCACGGgggCGUGUg -3'
miRNA:   3'- -CC-CGugCAuCUUCAUGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 156210 0.77 0.665139
Target:  5'- gGGGCACGUGGuGGUcACGCAGggGgGCu -3'
miRNA:   3'- -CCCGUGCAUCuUCA-UGUGUCagCgCG- -5'
3596 5' -51.6 NC_001650.1 + 129324 0.75 0.735905
Target:  5'- cGGGCGCGgGGGAGUGuCuCAGgaaGCGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAU-GuGUCag-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 73203 0.74 0.802174
Target:  5'- aGGgGCGUGGggG--CGCAGgagCGCGCg -3'
miRNA:   3'- cCCgUGCAUCuuCauGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 142337 0.74 0.811088
Target:  5'- cGGCugGaAGGAGUGCucCAGgagcCGCGCg -3'
miRNA:   3'- cCCGugCaUCUUCAUGu-GUCa---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 11983 0.74 0.819836
Target:  5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3'
miRNA:   3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 178690 0.74 0.819836
Target:  5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3'
miRNA:   3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 94168 0.73 0.840109
Target:  5'- gGGGCAgGU-GAAGaGCcuggcgucggccucgGCGGUCGCGCc -3'
miRNA:   3'- -CCCGUgCAuCUUCaUG---------------UGUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 57898 0.73 0.853016
Target:  5'- aGGGCGCG-GGAuaguagcccgGGUGCACGGggaaggGCGCg -3'
miRNA:   3'- -CCCGUGCaUCU----------UCAUGUGUCag----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 83240 0.73 0.853016
Target:  5'- -cGCGCGUcgAGAAGcucugcgACGCGGUCGCGg -3'
miRNA:   3'- ccCGUGCA--UCUUCa------UGUGUCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 123951 0.72 0.88295
Target:  5'- gGGGCccACGgggguGGAGUACACGGggGCGUu -3'
miRNA:   3'- -CCCG--UGCau---CUUCAUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 155838 0.72 0.89658
Target:  5'- gGGGCuCGUGGugagcgGGGU-CACGGgggCGCGCg -3'
miRNA:   3'- -CCCGuGCAUC------UUCAuGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 118047 0.71 0.908662
Target:  5'- cGGGCAgGcUGGAcgAGUACAgcccguggcgcacCAGcCGCGCg -3'
miRNA:   3'- -CCCGUgC-AUCU--UCAUGU-------------GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 46912 0.71 0.915263
Target:  5'- gGGGCugGgggGGggGUuCGCGaUCGCGg -3'
miRNA:   3'- -CCCGugCa--UCuuCAuGUGUcAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 88798 0.71 0.919879
Target:  5'- aGGCcCGUGGAcugcgagcuggcGUGCGCGGgCGCGCg -3'
miRNA:   3'- cCCGuGCAUCUu-----------CAUGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 59620 0.71 0.921009
Target:  5'- uGGGuCACGUAGuuGGUGaggcccuccaGCAG-CGCGCg -3'
miRNA:   3'- -CCC-GUGCAUCu-UCAUg---------UGUCaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.