miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 148039 0.69 0.968449
Target:  5'- aGGGCGCgGUGGAGcgGCGC-GUCuaGCGCc -3'
miRNA:   3'- -CCCGUG-CAUCUUcaUGUGuCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 61246 0.7 0.946104
Target:  5'- cGGcCACGUGGAGGgcgguggccUGCucCAGcCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUC---------AUGu-GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 154516 0.7 0.946104
Target:  5'- uGGGCAUGUAGuaccuGGgGCACgAGUCugGCGUc -3'
miRNA:   3'- -CCCGUGCAUCu----UCaUGUG-UCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 131683 0.7 0.954465
Target:  5'- gGGGCG-GUGGAGGUGCuCAGgacCGUGg -3'
miRNA:   3'- -CCCGUgCAUCUUCAUGuGUCa--GCGCg -5'
3596 5' -51.6 NC_001650.1 + 129956 0.69 0.958296
Target:  5'- cGGGCACGccccUGGAGGcGC-CcGUgGCGCg -3'
miRNA:   3'- -CCCGUGC----AUCUUCaUGuGuCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 15175 0.69 0.958296
Target:  5'- cGGGCGCGgcgcGggGUGuCugGggGUCGCGg -3'
miRNA:   3'- -CCCGUGCau--CuuCAU-GugU--CAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 124346 0.69 0.958296
Target:  5'- cGGGCGCGacccccgaaAGAacAGUAuCGCcgggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCa--------UCU--UCAU-GUG----UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 181882 0.69 0.958296
Target:  5'- cGGGCGCGgcgcGggGUGuCugGggGUCGCGg -3'
miRNA:   3'- -CCCGUGCau--CuuCAU-GugU--CAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 24354 0.69 0.961901
Target:  5'- gGGGagGCGUGGAGGUcccACuCGGU-GCGCa -3'
miRNA:   3'- -CCCg-UGCAUCUUCA---UGuGUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 68114 0.71 0.931774
Target:  5'- cGGGUugGUcaGGAuggGCGCGGUCuCGCu -3'
miRNA:   3'- -CCCGugCA--UCUucaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 132880 0.71 0.931774
Target:  5'- aGGCGCGagcgGGAGGUgguggAgGCGGUgGCGCc -3'
miRNA:   3'- cCCGUGCa---UCUUCA-----UgUGUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 136323 0.71 0.931259
Target:  5'- uGGCACGUgaGGAGGUagguggcgaagcaGgACAGgucCGCGCa -3'
miRNA:   3'- cCCGUGCA--UCUUCA-------------UgUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 57852 0.8 0.522252
Target:  5'- cGGCACGUAGGgcaGGUACugGGcCuGCGCg -3'
miRNA:   3'- cCCGUGCAUCU---UCAUGugUCaG-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 57898 0.73 0.853016
Target:  5'- aGGGCGCG-GGAuaguagcccgGGUGCACGGggaaggGCGCg -3'
miRNA:   3'- -CCCGUGCaUCU----------UCAUGUGUCag----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 83240 0.73 0.853016
Target:  5'- -cGCGCGUcgAGAAGcucugcgACGCGGUCGCGg -3'
miRNA:   3'- ccCGUGCA--UCUUCa------UGUGUCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 123951 0.72 0.88295
Target:  5'- gGGGCccACGgggguGGAGUACACGGggGCGUu -3'
miRNA:   3'- -CCCG--UGCau---CUUCAUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 118047 0.71 0.908662
Target:  5'- cGGGCAgGcUGGAcgAGUACAgcccguggcgcacCAGcCGCGCg -3'
miRNA:   3'- -CCCGUgC-AUCU--UCAUGU-------------GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 46912 0.71 0.915263
Target:  5'- gGGGCugGgggGGggGUuCGCGaUCGCGg -3'
miRNA:   3'- -CCCGugCa--UCuuCAuGUGUcAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 88798 0.71 0.919879
Target:  5'- aGGCcCGUGGAcugcgagcuggcGUGCGCGGgCGCGCg -3'
miRNA:   3'- cCCGuGCAUCUu-----------CAUGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 107679 0.71 0.925432
Target:  5'- gGGGCGCGgAGAAGUGCcugccuguuauuCAGUUuagGUGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAUGu-----------GUCAG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.