miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 71620 0.8 0.257824
Target:  5'- -cCUCCAUGcgcucgGGGGCCUCGGgaaAGGCGGCc -3'
miRNA:   3'- uaGAGGUAU------UUCCGGAGCC---UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 74751 0.67 0.899883
Target:  5'- -aCUCUA---GGGCCaCGGuGGCGGCc -3'
miRNA:   3'- uaGAGGUauuUCCGGaGCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 77920 0.67 0.91231
Target:  5'- cUCUCUAcagaAAAGGCCcCGccuauacaGAGGCGGCa -3'
miRNA:   3'- uAGAGGUa---UUUCCGGaGC--------CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 77929 0.68 0.849209
Target:  5'- gGUCUUCAaacaGGAGGag-CGGGGGCGGCu -3'
miRNA:   3'- -UAGAGGUa---UUUCCggaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 79248 0.66 0.923779
Target:  5'- cUCUCCA-GAGGGCuCUCccgGGAGGCc-- -3'
miRNA:   3'- uAGAGGUaUUUCCG-GAG---CCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 81579 0.74 0.53809
Target:  5'- -aCUCCAccAGGGCCUCGGGGucgccCGACg -3'
miRNA:   3'- uaGAGGUauUUCCGGAGCCUCc----GCUG- -5'
3597 3' -55.3 NC_001650.1 + 82998 0.66 0.939168
Target:  5'- cAUCgCCA-GGGGGCUggaggCGGAGGUGAa -3'
miRNA:   3'- -UAGaGGUaUUUCCGGa----GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 88428 0.66 0.918165
Target:  5'- cUCUCgAacgcGGAGGCCUCGccggccGAGGCGGg -3'
miRNA:   3'- uAGAGgUa---UUUCCGGAGC------CUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 93032 0.66 0.93428
Target:  5'- uUCUCCAccuuccUGAuaacGGGCacggCGGGGGCGGg -3'
miRNA:   3'- uAGAGGU------AUU----UCCGga--GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 101103 0.71 0.721527
Target:  5'- -gCUCUAUGcagaAGGGCUUCGGGGGCu-- -3'
miRNA:   3'- uaGAGGUAU----UUCCGGAGCCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 102463 0.67 0.886517
Target:  5'- --gUCCAgcagcAGGCCgcccaGGAGGUGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGag---CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 107524 0.66 0.918165
Target:  5'- gGUCUCCGUGGGGGaCCUgcugcagaacaGGcaGGGCGAg -3'
miRNA:   3'- -UAGAGGUAUUUCC-GGAg----------CC--UCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 107924 0.66 0.93428
Target:  5'- -aUUCCu---GGGCCcUGGAGGCGuCg -3'
miRNA:   3'- uaGAGGuauuUCCGGaGCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 108070 0.66 0.943362
Target:  5'- cUgUCCAggcuguuUGAcGGGUCgCGGGGGCGGCa -3'
miRNA:   3'- uAgAGGU-------AUU-UCCGGaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 108607 0.71 0.730464
Target:  5'- cGUCUaugaaccCCGUGAugauGGGCuCUCGGGGGgGACc -3'
miRNA:   3'- -UAGA-------GGUAUU----UCCG-GAGCCUCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 110962 0.79 0.311346
Target:  5'- uGUCUCgG---GGGCUUCGGGGGCGGCu -3'
miRNA:   3'- -UAGAGgUauuUCCGGAGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 116214 0.68 0.849209
Target:  5'- cUCUUUAgGGAGGCCgUGGAGGUGGa -3'
miRNA:   3'- uAGAGGUaUUUCCGGaGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 117348 0.67 0.893316
Target:  5'- -cCUCC-UAAAGuaCCaCGGGGGCGACg -3'
miRNA:   3'- uaGAGGuAUUUCc-GGaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 117751 0.66 0.93428
Target:  5'- -aCUCCAgGucGGgUUCaGGGGCGACa -3'
miRNA:   3'- uaGAGGUaUuuCCgGAGcCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 121569 0.66 0.939168
Target:  5'- -aCUCCGcGAcccccuGGaCCgCGGGGGCGGCg -3'
miRNA:   3'- uaGAGGUaUUu-----CC-GGaGCCUCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.