miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 826 0.66 0.923779
Target:  5'- ---aCCaAUGGGGGCC-CGGgggaGGGCGGCa -3'
miRNA:   3'- uagaGG-UAUUUCCGGaGCC----UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 855 0.69 0.832848
Target:  5'- cGUCUCCGggcAGaCCUCGGGGGaGACc -3'
miRNA:   3'- -UAGAGGUauuUCcGGAGCCUCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 1290 0.68 0.857095
Target:  5'- cAUCaagCCaAUGGGGGCC-CGGGGGUGGg -3'
miRNA:   3'- -UAGa--GG-UAUUUCCGGaGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 1475 0.66 0.943816
Target:  5'- cAUCUagCCaAUGGGGGCC-CGGgGGGCGGg -3'
miRNA:   3'- -UAGA--GG-UAUUUCCGGaGCC-UCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 1763 0.66 0.943816
Target:  5'- cAUUggCCAUGGAGGCCcugUgGGAGGUGcCc -3'
miRNA:   3'- -UAGa-GGUAUUUCCGG---AgCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 3273 0.68 0.841125
Target:  5'- ---gCCAaugGGAGGCCUcCGGGcccGGCGACg -3'
miRNA:   3'- uagaGGUa--UUUCCGGA-GCCU---CCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 21776 0.95 0.02958
Target:  5'- uAUCUCCAUAAAGGCCUCGGAGG-GACc -3'
miRNA:   3'- -UAGAGGUAUUUCCGGAGCCUCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 21927 0.66 0.93428
Target:  5'- -gUUCCAgc-AGcGCCUgcaucaUGGGGGCGACg -3'
miRNA:   3'- uaGAGGUauuUC-CGGA------GCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 22008 0.66 0.923779
Target:  5'- -cCUCCcc-GGGGCCUCGGccGGCGcCc -3'
miRNA:   3'- uaGAGGuauUUCCGGAGCCu-CCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 22279 0.76 0.451387
Target:  5'- gAUCUCCAccGGGGCCUCGGAGcugGACc -3'
miRNA:   3'- -UAGAGGUauUUCCGGAGCCUCcg-CUG- -5'
3597 3' -55.3 NC_001650.1 + 22555 0.69 0.786087
Target:  5'- cAUCUCCcccAAGGCCUgccugucgcccgucCGG-GGCGGCg -3'
miRNA:   3'- -UAGAGGuauUUCCGGA--------------GCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 26655 0.73 0.568314
Target:  5'- gGUCUCgGUGAAGGCgUCcgcguaccacagGGAGGUGAUa -3'
miRNA:   3'- -UAGAGgUAUUUCCGgAG------------CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 27474 0.67 0.893316
Target:  5'- --gUCCAgaagcAGGCCUCcaaccGGGGCGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGAGc----CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 28028 0.73 0.598944
Target:  5'- ---aCCGUGcuggaGAGGCuCUCGGAGGCGGg -3'
miRNA:   3'- uagaGGUAU-----UUCCG-GAGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 34288 0.67 0.899883
Target:  5'- uUCUCCcucuuugGGAGcauaGUCUCGGGGGUGAUa -3'
miRNA:   3'- uAGAGGua-----UUUC----CGGAGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 35313 0.66 0.918165
Target:  5'- -aUUCCuugGucGGCCgcgaGGGGGCGGCc -3'
miRNA:   3'- uaGAGGua-UuuCCGGag--CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 46502 0.66 0.93428
Target:  5'- cUCUCCcc---GGCgUCGGGgccGGCGGCg -3'
miRNA:   3'- uAGAGGuauuuCCGgAGCCU---CCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 47567 0.7 0.751034
Target:  5'- gAUCaagCCGcgAGAGGCgCUCGGgcgGGGCGACc -3'
miRNA:   3'- -UAGa--GGUa-UUUCCG-GAGCC---UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 58785 0.66 0.936264
Target:  5'- -cCUCCAUccacccggacgcccuGcccGGGGCCaagGGGGGCGACa -3'
miRNA:   3'- uaGAGGUA---------------U---UUCCGGag-CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 62185 0.68 0.849209
Target:  5'- aGUCUUU----GGGCgaCGGGGGCGGCa -3'
miRNA:   3'- -UAGAGGuauuUCCGgaGCCUCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.