miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 46502 0.66 0.93428
Target:  5'- cUCUCCcc---GGCgUCGGGgccGGCGGCg -3'
miRNA:   3'- uAGAGGuauuuCCGgAGCCU---CCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 102463 0.67 0.886517
Target:  5'- --gUCCAgcagcAGGCCgcccaGGAGGUGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGag---CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 136086 0.67 0.893316
Target:  5'- ---gCCAUGAAGGC---GGGGGCGGCc -3'
miRNA:   3'- uagaGGUAUUUCCGgagCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 27474 0.67 0.893316
Target:  5'- --gUCCAgaagcAGGCCUCcaaccGGGGCGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGAGc----CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 130969 0.67 0.899883
Target:  5'- -aCUCCc-AGAGGCC-CGucuucGAGGCGGCg -3'
miRNA:   3'- uaGAGGuaUUUCCGGaGC-----CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 34288 0.67 0.899883
Target:  5'- uUCUCCcucuuugGGAGcauaGUCUCGGGGGUGAUa -3'
miRNA:   3'- uAGAGGua-----UUUC----CGGAGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 129126 0.66 0.918165
Target:  5'- -aCUCCcccgcgcccGGGGCCgaggacaCGGGGGCGGCc -3'
miRNA:   3'- uaGAGGuau------UUCCGGa------GCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 125017 0.66 0.923779
Target:  5'- gAUCgCCAgagGGGGUCcCGGGGGCGGa -3'
miRNA:   3'- -UAGaGGUau-UUCCGGaGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 117751 0.66 0.93428
Target:  5'- -aCUCCAgGucGGgUUCaGGGGCGACa -3'
miRNA:   3'- uaGAGGUaUuuCCgGAGcCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 121962 0.68 0.857095
Target:  5'- -gCUCCccgagcUGGAGGCCaugcugCGGGGGCGGg -3'
miRNA:   3'- uaGAGGu-----AUUUCCGGa-----GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 62185 0.68 0.849209
Target:  5'- aGUCUUU----GGGCgaCGGGGGCGGCa -3'
miRNA:   3'- -UAGAGGuauuUCCGgaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 77929 0.68 0.849209
Target:  5'- gGUCUUCAaacaGGAGGag-CGGGGGCGGCu -3'
miRNA:   3'- -UAGAGGUa---UUUCCggaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 81579 0.74 0.53809
Target:  5'- -aCUCCAccAGGGCCUCGGGGucgccCGACg -3'
miRNA:   3'- uaGAGGUauUUCCGGAGCCUCc----GCUG- -5'
3597 3' -55.3 NC_001650.1 + 26655 0.73 0.568314
Target:  5'- gGUCUCgGUGAAGGCgUCcgcguaccacagGGAGGUGAUa -3'
miRNA:   3'- -UAGAGgUAUUUCCGgAG------------CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 28028 0.73 0.598944
Target:  5'- ---aCCGUGcuggaGAGGCuCUCGGAGGCGGg -3'
miRNA:   3'- uagaGGUAU-----UUCCG-GAGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 145389 0.73 0.598944
Target:  5'- cAUCUCCAUGGggauGGCCgcgUGGGGGUGGu -3'
miRNA:   3'- -UAGAGGUAUUu---CCGGa--GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 165731 0.71 0.721527
Target:  5'- uUUUCUcgGGGGGCC-CGG-GGCGGCu -3'
miRNA:   3'- uAGAGGuaUUUCCGGaGCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 123939 0.7 0.751034
Target:  5'- cGUCUCCuacguGGGGCCcaCGGGGGUGGa -3'
miRNA:   3'- -UAGAGGuau--UUCCGGa-GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 22555 0.69 0.786087
Target:  5'- cAUCUCCcccAAGGCCUgccugucgcccgucCGG-GGCGGCg -3'
miRNA:   3'- -UAGAGGuauUUCCGGA--------------GCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 161011 0.69 0.788851
Target:  5'- -cCUCCAUgGGGGGUCUUGGAauGCGGCg -3'
miRNA:   3'- uaGAGGUA-UUUCCGGAGCCUc-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.