Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3597 | 3' | -55.3 | NC_001650.1 | + | 21776 | 0.95 | 0.02958 |
Target: 5'- uAUCUCCAUAAAGGCCUCGGAGG-GACc -3' miRNA: 3'- -UAGAGGUAUUUCCGGAGCCUCCgCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 71620 | 0.8 | 0.257824 |
Target: 5'- -cCUCCAUGcgcucgGGGGCCUCGGgaaAGGCGGCc -3' miRNA: 3'- uaGAGGUAU------UUCCGGAGCC---UCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 110962 | 0.79 | 0.311346 |
Target: 5'- uGUCUCgG---GGGCUUCGGGGGCGGCu -3' miRNA: 3'- -UAGAGgUauuUCCGGAGCCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 22279 | 0.76 | 0.451387 |
Target: 5'- gAUCUCCAccGGGGCCUCGGAGcugGACc -3' miRNA: 3'- -UAGAGGUauUUCCGGAGCCUCcg-CUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 81579 | 0.74 | 0.53809 |
Target: 5'- -aCUCCAccAGGGCCUCGGGGucgccCGACg -3' miRNA: 3'- uaGAGGUauUUCCGGAGCCUCc----GCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 26655 | 0.73 | 0.568314 |
Target: 5'- gGUCUCgGUGAAGGCgUCcgcguaccacagGGAGGUGAUa -3' miRNA: 3'- -UAGAGgUAUUUCCGgAG------------CCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 145389 | 0.73 | 0.598944 |
Target: 5'- cAUCUCCAUGGggauGGCCgcgUGGGGGUGGu -3' miRNA: 3'- -UAGAGGUAUUu---CCGGa--GCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 28028 | 0.73 | 0.598944 |
Target: 5'- ---aCCGUGcuggaGAGGCuCUCGGAGGCGGg -3' miRNA: 3'- uagaGGUAU-----UUCCG-GAGCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 165731 | 0.71 | 0.721527 |
Target: 5'- uUUUCUcgGGGGGCC-CGG-GGCGGCu -3' miRNA: 3'- uAGAGGuaUUUCCGGaGCCuCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 101103 | 0.71 | 0.721527 |
Target: 5'- -gCUCUAUGcagaAGGGCUUCGGGGGCu-- -3' miRNA: 3'- uaGAGGUAU----UUCCGGAGCCUCCGcug -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 108607 | 0.71 | 0.730464 |
Target: 5'- cGUCUaugaaccCCGUGAugauGGGCuCUCGGGGGgGACc -3' miRNA: 3'- -UAGA-------GGUAUU----UCCG-GAGCCUCCgCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 123939 | 0.7 | 0.751034 |
Target: 5'- cGUCUCCuacguGGGGCCcaCGGGGGUGGa -3' miRNA: 3'- -UAGAGGuau--UUCCGGa-GCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 47567 | 0.7 | 0.751034 |
Target: 5'- gAUCaagCCGcgAGAGGCgCUCGGgcgGGGCGACc -3' miRNA: 3'- -UAGa--GGUa-UUUCCG-GAGCC---UCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 131104 | 0.7 | 0.751034 |
Target: 5'- -gCUCCAgGAcccgcucguGGGUCUCGGGGGCG-Cu -3' miRNA: 3'- uaGAGGUaUU---------UCCGGAGCCUCCGCuG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 22555 | 0.69 | 0.786087 |
Target: 5'- cAUCUCCcccAAGGCCUgccugucgcccgucCGG-GGCGGCg -3' miRNA: 3'- -UAGAGGuauUUCCGGA--------------GCCuCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 161011 | 0.69 | 0.788851 |
Target: 5'- -cCUCCAUgGGGGGUCUUGGAauGCGGCg -3' miRNA: 3'- uaGAGGUA-UUUCCGGAGCCUc-CGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 155708 | 0.69 | 0.788851 |
Target: 5'- uUCUCCcu--GGGCCUCGGGGaGCu-- -3' miRNA: 3'- uAGAGGuauuUCCGGAGCCUC-CGcug -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 167562 | 0.69 | 0.832848 |
Target: 5'- cGUCUCCGggcAGaCCUCGGGGGaGACc -3' miRNA: 3'- -UAGAGGUauuUCcGGAGCCUCCgCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 855 | 0.69 | 0.832848 |
Target: 5'- cGUCUCCGggcAGaCCUCGGGGGaGACc -3' miRNA: 3'- -UAGAGGUauuUCcGGAGCCUCCgCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 169980 | 0.68 | 0.841125 |
Target: 5'- ---gCCAaugGGAGGCCUcCGGGcccGGCGACg -3' miRNA: 3'- uagaGGUa--UUUCCGGA-GCCU---CCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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