miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 165731 0.71 0.721527
Target:  5'- uUUUCUcgGGGGGCC-CGG-GGCGGCu -3'
miRNA:   3'- uAGAGGuaUUUCCGGaGCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 123939 0.7 0.751034
Target:  5'- cGUCUCCuacguGGGGCCcaCGGGGGUGGa -3'
miRNA:   3'- -UAGAGGuau--UUCCGGa-GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 22555 0.69 0.786087
Target:  5'- cAUCUCCcccAAGGCCUgccugucgcccgucCGG-GGCGGCg -3'
miRNA:   3'- -UAGAGGuauUUCCGGA--------------GCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 161011 0.69 0.788851
Target:  5'- -cCUCCAUgGGGGGUCUUGGAauGCGGCg -3'
miRNA:   3'- uaGAGGUA-UUUCCGGAGCCUc-CGCUG- -5'
3597 3' -55.3 NC_001650.1 + 77929 0.68 0.849209
Target:  5'- gGUCUUCAaacaGGAGGag-CGGGGGCGGCu -3'
miRNA:   3'- -UAGAGGUa---UUUCCggaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 62185 0.68 0.849209
Target:  5'- aGUCUUU----GGGCgaCGGGGGCGGCa -3'
miRNA:   3'- -UAGAGGuauuUCCGgaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 121962 0.68 0.857095
Target:  5'- -gCUCCccgagcUGGAGGCCaugcugCGGGGGCGGg -3'
miRNA:   3'- uaGAGGu-----AUUUCCGGa-----GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 102463 0.67 0.886517
Target:  5'- --gUCCAgcagcAGGCCgcccaGGAGGUGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGag---CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 155708 0.69 0.788851
Target:  5'- uUCUCCcu--GGGCCUCGGGGaGCu-- -3'
miRNA:   3'- uAGAGGuauuUCCGGAGCCUC-CGcug -5'
3597 3' -55.3 NC_001650.1 + 167562 0.69 0.832848
Target:  5'- cGUCUCCGggcAGaCCUCGGGGGaGACc -3'
miRNA:   3'- -UAGAGGUauuUCcGGAGCCUCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 855 0.69 0.832848
Target:  5'- cGUCUCCGggcAGaCCUCGGGGGaGACc -3'
miRNA:   3'- -UAGAGGUauuUCcGGAGCCUCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 169980 0.68 0.841125
Target:  5'- ---gCCAaugGGAGGCCUcCGGGcccGGCGACg -3'
miRNA:   3'- uagaGGUa--UUUCCGGA-GCCU---CCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 134093 0.68 0.841125
Target:  5'- gGUC-CCAggggcGGCCUCuaGAGGCGACc -3'
miRNA:   3'- -UAGaGGUauuu-CCGGAGc-CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 47567 0.7 0.751034
Target:  5'- gAUCaagCCGcgAGAGGCgCUCGGgcgGGGCGACc -3'
miRNA:   3'- -UAGa--GGUa-UUUCCG-GAGCC---UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 131104 0.7 0.751034
Target:  5'- -gCUCCAgGAcccgcucguGGGUCUCGGGGGCG-Cu -3'
miRNA:   3'- uaGAGGUaUU---------UCCGGAGCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 108607 0.71 0.730464
Target:  5'- cGUCUaugaaccCCGUGAugauGGGCuCUCGGGGGgGACc -3'
miRNA:   3'- -UAGA-------GGUAUU----UCCG-GAGCCUCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 101103 0.71 0.721527
Target:  5'- -gCUCUAUGcagaAGGGCUUCGGGGGCu-- -3'
miRNA:   3'- uaGAGGUAU----UUCCGGAGCCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 110962 0.79 0.311346
Target:  5'- uGUCUCgG---GGGCUUCGGGGGCGGCu -3'
miRNA:   3'- -UAGAGgUauuUCCGGAGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 71620 0.8 0.257824
Target:  5'- -cCUCCAUGcgcucgGGGGCCUCGGgaaAGGCGGCc -3'
miRNA:   3'- uaGAGGUAU------UUCCGGAGCC---UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 1475 0.66 0.943816
Target:  5'- cAUCUagCCaAUGGGGGCC-CGGgGGGCGGg -3'
miRNA:   3'- -UAGA--GG-UAUUUCCGGaGCC-UCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.