Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3597 | 5' | -64.8 | NC_001650.1 | + | 164635 | 0.66 | 0.559252 |
Target: 5'- aCGCCGCcccgGGCCgcGCGGCacccgggCUCCCGGgGg -3' miRNA: 3'- gGUGGCG----UCGG--CGCCGg------GAGGGUCgU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 68927 | 0.66 | 0.56865 |
Target: 5'- aCCAgCGCucuacGCCGCccCCCUCCCuGGCu -3' miRNA: 3'- -GGUgGCGu----CGGCGccGGGAGGG-UCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 68795 | 0.66 | 0.587558 |
Target: 5'- aCCAgUGCguggggcaGGCCGgGGCCCUCgCUcgaggGGCGg -3' miRNA: 3'- -GGUgGCG--------UCGGCgCCGGGAG-GG-----UCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 137539 | 0.66 | 0.549898 |
Target: 5'- gCACCuGCAcCCGCuGGCCCUCagCuGCAu -3' miRNA: 3'- gGUGG-CGUcGGCG-CCGGGAGg-GuCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 157380 | 0.66 | 0.540593 |
Target: 5'- -aGgCGCAGCCGUugaGGCCCgcggCCUucuGCAg -3' miRNA: 3'- ggUgGCGUCGGCG---CCGGGa---GGGu--CGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 101831 | 0.66 | 0.549898 |
Target: 5'- -gGCCGCAGCaGCaGGUgCUC-CAGCAg -3' miRNA: 3'- ggUGGCGUCGgCG-CCGgGAGgGUCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 90555 | 0.66 | 0.540593 |
Target: 5'- gUAgCGgGGCUGCGuGCCCUCgagguCCAGCu -3' miRNA: 3'- gGUgGCgUCGGCGC-CGGGAG-----GGUCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 156624 | 0.66 | 0.530419 |
Target: 5'- aUCACCGCccucuccAGCUG-GGCCCUguagUCCGGCc -3' miRNA: 3'- -GGUGGCG-------UCGGCgCCGGGA----GGGUCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 100575 | 0.66 | 0.587558 |
Target: 5'- gCAcCCGcCGGCCGCGuCCCUCaCCcGCc -3' miRNA: 3'- gGU-GGC-GUCGGCGCcGGGAG-GGuCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 71382 | 0.66 | 0.587558 |
Target: 5'- cCCugCGCcggcgcgcuccaGGCCGCcuuucccgaGGCCC-CCgAGCGc -3' miRNA: 3'- -GGugGCG------------UCGGCG---------CCGGGaGGgUCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 158050 | 0.66 | 0.587558 |
Target: 5'- aCGCCGCAG--GCGGCCCcggaaaCCCuGUAa -3' miRNA: 3'- gGUGGCGUCggCGCCGGGa-----GGGuCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 49124 | 0.66 | 0.548033 |
Target: 5'- aCCACCGUcagGGCgGCGGgagugaccuccaCCUUCCAGUu -3' miRNA: 3'- -GGUGGCG---UCGgCGCCg-----------GGAGGGUCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 53912 | 0.66 | 0.565827 |
Target: 5'- gCCG-CGCucugauuggucgagAGCCGgcUGGCCCUCUCGGCc -3' miRNA: 3'- -GGUgGCG--------------UCGGC--GCCGGGAGGGUCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 133892 | 0.66 | 0.578087 |
Target: 5'- -aGCCGCAGgUGCGGgCCUcgcucgCCCGGgAg -3' miRNA: 3'- ggUGGCGUCgGCGCCgGGA------GGGUCgU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 608 | 0.66 | 0.559252 |
Target: 5'- -gGCCG-GGCUGCcGCCCUCCCccgGGCc -3' miRNA: 3'- ggUGGCgUCGGCGcCGGGAGGG---UCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 111190 | 0.67 | 0.50395 |
Target: 5'- -gGCCcagGCGGCUcagGCGGCCCgcgCCCccaGGCAg -3' miRNA: 3'- ggUGG---CGUCGG---CGCCGGGa--GGG---UCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 67242 | 0.67 | 0.494955 |
Target: 5'- gCCAgCGagAGgCGCGGCCgCUCgUAGCAg -3' miRNA: 3'- -GGUgGCg-UCgGCGCCGG-GAGgGUCGU- -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 136581 | 0.67 | 0.486033 |
Target: 5'- aUCGCCGCAccaGCCccaGGCCCgaagacaaaCCCAGCc -3' miRNA: 3'- -GGUGGCGU---CGGcg-CCGGGa--------GGGUCGu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 128593 | 0.67 | 0.486033 |
Target: 5'- cCCACCGCcccGCCGa-GCCCgugaCCCAGg- -3' miRNA: 3'- -GGUGGCGu--CGGCgcCGGGa---GGGUCgu -5' |
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3597 | 5' | -64.8 | NC_001650.1 | + | 132945 | 0.67 | 0.477188 |
Target: 5'- cCCcCCGCGG-CGCGaGCCCU-CCGGUg -3' miRNA: 3'- -GGuGGCGUCgGCGC-CGGGAgGGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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