miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 166340 0.66 0.531341
Target:  5'- gCCAcCCGCGGCCuGUgGGCCC-CUguGUAa -3'
miRNA:   3'- -GGU-GGCGUCGG-CG-CCGGGaGGguCGU- -5'
3597 5' -64.8 NC_001650.1 + 111091 0.66 0.540593
Target:  5'- gUCGCCGCGGCgGCGGCgauaggggCCCguAGCu -3'
miRNA:   3'- -GGUGGCGUCGgCGCCGgga-----GGG--UCGu -5'
3597 5' -64.8 NC_001650.1 + 100575 0.66 0.587558
Target:  5'- gCAcCCGcCGGCCGCGuCCCUCaCCcGCc -3'
miRNA:   3'- gGU-GGC-GUCGGCGCcGGGAG-GGuCGu -5'
3597 5' -64.8 NC_001650.1 + 167315 0.66 0.559252
Target:  5'- -gGCCG-GGCUGCcGCCCUCCCccgGGCc -3'
miRNA:   3'- ggUGGCgUCGGCGcCGGGAGGG---UCGu -5'
3597 5' -64.8 NC_001650.1 + 608 0.66 0.559252
Target:  5'- -gGCCG-GGCUGCcGCCCUCCCccgGGCc -3'
miRNA:   3'- ggUGGCgUCGGCGcCGGGAGGG---UCGu -5'
3597 5' -64.8 NC_001650.1 + 68795 0.66 0.587558
Target:  5'- aCCAgUGCguggggcaGGCCGgGGCCCUCgCUcgaggGGCGg -3'
miRNA:   3'- -GGUgGCG--------UCGGCgCCGGGAG-GG-----UCGU- -5'
3597 5' -64.8 NC_001650.1 + 170217 0.66 0.531341
Target:  5'- gCCGCCGCuccucaccaCGUGGCCCcuaCCGGCc -3'
miRNA:   3'- -GGUGGCGucg------GCGCCGGGag-GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 158050 0.66 0.587558
Target:  5'- aCGCCGCAG--GCGGCCCcggaaaCCCuGUAa -3'
miRNA:   3'- gGUGGCGUCggCGCCGGGa-----GGGuCGU- -5'
3597 5' -64.8 NC_001650.1 + 156624 0.66 0.530419
Target:  5'- aUCACCGCccucuccAGCUG-GGCCCUguagUCCGGCc -3'
miRNA:   3'- -GGUGGCG-------UCGGCgCCGGGA----GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 51660 0.66 0.587558
Target:  5'- aCCACCGUgacGGCCacGCucaGGUUCUCCCuGUAg -3'
miRNA:   3'- -GGUGGCG---UCGG--CG---CCGGGAGGGuCGU- -5'
3597 5' -64.8 NC_001650.1 + 60331 0.66 0.531341
Target:  5'- -gACCGCGGaCGCGGCCUcCgCgGGCGg -3'
miRNA:   3'- ggUGGCGUCgGCGCCGGGaG-GgUCGU- -5'
3597 5' -64.8 NC_001650.1 + 137539 0.66 0.549898
Target:  5'- gCACCuGCAcCCGCuGGCCCUCagCuGCAu -3'
miRNA:   3'- gGUGG-CGUcGGCG-CCGGGAGg-GuCGU- -5'
3597 5' -64.8 NC_001650.1 + 90555 0.66 0.540593
Target:  5'- gUAgCGgGGCUGCGuGCCCUCgagguCCAGCu -3'
miRNA:   3'- gGUgGCgUCGGCGC-CGGGAG-----GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 68927 0.66 0.56865
Target:  5'- aCCAgCGCucuacGCCGCccCCCUCCCuGGCu -3'
miRNA:   3'- -GGUgGCGu----CGGCGccGGGAGGG-UCGu -5'
3597 5' -64.8 NC_001650.1 + 101831 0.66 0.549898
Target:  5'- -gGCCGCAGCaGCaGGUgCUC-CAGCAg -3'
miRNA:   3'- ggUGGCGUCGgCG-CCGgGAGgGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 3510 0.66 0.531341
Target:  5'- gCCGCCGCuccucaccaCGUGGCCCcuaCCGGCc -3'
miRNA:   3'- -GGUGGCGucg------GCGCCGGGag-GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 46236 0.66 0.531341
Target:  5'- -gGCCGCGGCCGCuGUCaa-UCAGCGa -3'
miRNA:   3'- ggUGGCGUCGGCGcCGGgagGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 164635 0.66 0.559252
Target:  5'- aCGCCGCcccgGGCCgcGCGGCacccgggCUCCCGGgGg -3'
miRNA:   3'- gGUGGCG----UCGG--CGCCGg------GAGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 78818 0.66 0.531341
Target:  5'- uCUGCCGCAGCgGC-GCCCgcaCAGCc -3'
miRNA:   3'- -GGUGGCGUCGgCGcCGGGaggGUCGu -5'
3597 5' -64.8 NC_001650.1 + 71382 0.66 0.587558
Target:  5'- cCCugCGCcggcgcgcuccaGGCCGCcuuucccgaGGCCC-CCgAGCGc -3'
miRNA:   3'- -GGugGCG------------UCGGCG---------CCGGGaGGgUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.