miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 21743 1.09 0.000616
Target:  5'- uCCACCGCAGCCGCGGCCCUCCCAGCAg -3'
miRNA:   3'- -GGUGGCGUCGGCGCCGGGAGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 133046 0.84 0.039489
Target:  5'- gCCGCgGCGGCCGCGGCuCCUCCC-GCu -3'
miRNA:   3'- -GGUGgCGUCGGCGCCG-GGAGGGuCGu -5'
3597 5' -64.8 NC_001650.1 + 35903 0.8 0.074218
Target:  5'- aCC-CCGCGGCCGUGaGCCC-CCCGGCc -3'
miRNA:   3'- -GGuGGCGUCGGCGC-CGGGaGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 164921 0.77 0.130757
Target:  5'- cCCACCGCGGCCGCcGCCagucucucacCCCGGCu -3'
miRNA:   3'- -GGUGGCGUCGGCGcCGGga--------GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 57769 0.75 0.158056
Target:  5'- cCCAgCCGCAGCUGCaaccacaGGCCCagcCCCAGCc -3'
miRNA:   3'- -GGU-GGCGUCGGCG-------CCGGGa--GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 102530 0.74 0.191292
Target:  5'- -aGCCGCAGCCcCaGCCCUaCCAGCAa -3'
miRNA:   3'- ggUGGCGUCGGcGcCGGGAgGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 126406 0.74 0.191292
Target:  5'- cCCGCCGCcccGCCGCGGuUCCUCCCu--- -3'
miRNA:   3'- -GGUGGCGu--CGGCGCC-GGGAGGGucgu -5'
3597 5' -64.8 NC_001650.1 + 52782 0.74 0.205084
Target:  5'- cUCGCgGCGGCgGCGGCCCUcggggCCCgGGCGc -3'
miRNA:   3'- -GGUGgCGUCGgCGCCGGGA-----GGG-UCGU- -5'
3597 5' -64.8 NC_001650.1 + 102437 0.74 0.205084
Target:  5'- cCCAgCUGCAGCCGUGcgucguGCCCgUCCAGCAg -3'
miRNA:   3'- -GGU-GGCGUCGGCGC------CGGGaGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 128695 0.74 0.205084
Target:  5'- uCCAUgCGCAGCuCGCGcGCCgCgaagCCCAGCAg -3'
miRNA:   3'- -GGUG-GCGUCG-GCGC-CGG-Ga---GGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 142888 0.73 0.219729
Target:  5'- gCCGCCGCcGCCcCGGCCCgugcagCCGGCGc -3'
miRNA:   3'- -GGUGGCGuCGGcGCCGGGag----GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 128522 0.73 0.229982
Target:  5'- cCCACCGCcuCCGCgaaGGCCCUguccuugaccCCCGGCu -3'
miRNA:   3'- -GGUGGCGucGGCG---CCGGGA----------GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 46576 0.73 0.229982
Target:  5'- gCC-CCGCGGCCgauGCGGCgCCgcgcCCCGGCu -3'
miRNA:   3'- -GGuGGCGUCGG---CGCCG-GGa---GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 52899 0.72 0.251697
Target:  5'- cCCGCUGCGGcCCGagaGGCCCaagUCCCuGCu -3'
miRNA:   3'- -GGUGGCGUC-GGCg--CCGGG---AGGGuCGu -5'
3597 5' -64.8 NC_001650.1 + 76678 0.72 0.263174
Target:  5'- gCCACUGCAcccCCGUGGCCUUgUCGGCGu -3'
miRNA:   3'- -GGUGGCGUc--GGCGCCGGGAgGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 146879 0.72 0.275073
Target:  5'- gUCACCGC-GCCG-GGCCCgucgCCCGGg- -3'
miRNA:   3'- -GGUGGCGuCGGCgCCGGGa---GGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 134162 0.72 0.275073
Target:  5'- gCgACCGCGG--GCGGCCCUCCCcacGCGa -3'
miRNA:   3'- -GgUGGCGUCggCGCCGGGAGGGu--CGU- -5'
3597 5' -64.8 NC_001650.1 + 124512 0.71 0.281182
Target:  5'- gCCACCuCGuccGCCGCGGCCUcgUCCCuGCc -3'
miRNA:   3'- -GGUGGcGU---CGGCGCCGGG--AGGGuCGu -5'
3597 5' -64.8 NC_001650.1 + 27793 0.71 0.287399
Target:  5'- -aGCUGU-GCCGCGGCuCCUgCCCGGCc -3'
miRNA:   3'- ggUGGCGuCGGCGCCG-GGA-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 164808 0.71 0.300155
Target:  5'- gCCGCCgGCGGCCGCGaGCagaCCcCCgCGGCAa -3'
miRNA:   3'- -GGUGG-CGUCGGCGC-CG---GGaGG-GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.