miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 42381 0.68 0.451149
Target:  5'- --uCUGCAGCUGCaGCCCcCCCguGGCAg -3'
miRNA:   3'- gguGGCGUCGGCGcCGGGaGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 8873 0.7 0.333942
Target:  5'- aCGCUGCcugggAGCgGCGcGCCCUCCCugAGUAa -3'
miRNA:   3'- gGUGGCG-----UCGgCGC-CGGGAGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 175580 0.7 0.333942
Target:  5'- aCGCUGCcugggAGCgGCGcGCCCUCCCugAGUAa -3'
miRNA:   3'- gGUGGCG-----UCGgCGC-CGGGAGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 21542 0.69 0.375754
Target:  5'- -gGCCGCGGCUGCGGUggacccgggggucgCCUCCgaGGCc -3'
miRNA:   3'- ggUGGCGUCGGCGCCG--------------GGAGGg-UCGu -5'
3597 5' -64.8 NC_001650.1 + 50516 0.69 0.375754
Target:  5'- aCCACCGCgcacgggGGCaaccugagcgagGUGGCCUUCCUGGCGg -3'
miRNA:   3'- -GGUGGCG-------UCGg-----------CGCCGGGAGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 45105 0.69 0.401526
Target:  5'- -gGCUGCGGCuUGCGGCCgcggUUCCCAGgGa -3'
miRNA:   3'- ggUGGCGUCG-GCGCCGG----GAGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 156673 0.69 0.412794
Target:  5'- gCACCGCGGCgGUgucuggagcugGGCCagcucaaaggccggUCCCAGCAu -3'
miRNA:   3'- gGUGGCGUCGgCG-----------CCGGg-------------AGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 146466 0.68 0.424255
Target:  5'- aC-CCGCGGCCcuagGCGGCCCgggcgccgcgagCCCAGa- -3'
miRNA:   3'- gGuGGCGUCGG----CGCCGGGa-----------GGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 109405 0.68 0.441797
Target:  5'- aCCACCGgGGCCggugcguGCGGCUCcCCCA-CAc -3'
miRNA:   3'- -GGUGGCgUCGG-------CGCCGGGaGGGUcGU- -5'
3597 5' -64.8 NC_001650.1 + 136075 0.71 0.309342
Target:  5'- gCC-CCGCGGCCgccaugaaggcggggGCGGCCUUgUCCAGCc -3'
miRNA:   3'- -GGuGGCGUCGG---------------CGCCGGGA-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 142343 0.71 0.306695
Target:  5'- uCCACCuucaugGCGGCCGCGGaCUUCCUggAGCu -3'
miRNA:   3'- -GGUGG------CGUCGGCGCCgGGAGGG--UCGu -5'
3597 5' -64.8 NC_001650.1 + 164808 0.71 0.300155
Target:  5'- gCCGCCgGCGGCCGCGaGCagaCCcCCgCGGCAa -3'
miRNA:   3'- -GGUGG-CGUCGGCGC-CG---GGaGG-GUCGU- -5'
3597 5' -64.8 NC_001650.1 + 102530 0.74 0.191292
Target:  5'- -aGCCGCAGCCcCaGCCCUaCCAGCAa -3'
miRNA:   3'- ggUGGCGUCGGcGcCGGGAgGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 52782 0.74 0.205084
Target:  5'- cUCGCgGCGGCgGCGGCCCUcggggCCCgGGCGc -3'
miRNA:   3'- -GGUGgCGUCGgCGCCGGGA-----GGG-UCGU- -5'
3597 5' -64.8 NC_001650.1 + 102437 0.74 0.205084
Target:  5'- cCCAgCUGCAGCCGUGcgucguGCCCgUCCAGCAg -3'
miRNA:   3'- -GGU-GGCGUCGGCGC------CGGGaGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 142888 0.73 0.219729
Target:  5'- gCCGCCGCcGCCcCGGCCCgugcagCCGGCGc -3'
miRNA:   3'- -GGUGGCGuCGGcGCCGGGag----GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 76678 0.72 0.263174
Target:  5'- gCCACUGCAcccCCGUGGCCUUgUCGGCGu -3'
miRNA:   3'- -GGUGGCGUc--GGCGCCGGGAgGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 134162 0.72 0.275073
Target:  5'- gCgACCGCGG--GCGGCCCUCCCcacGCGa -3'
miRNA:   3'- -GgUGGCGUCggCGCCGGGAGGGu--CGU- -5'
3597 5' -64.8 NC_001650.1 + 27793 0.71 0.287399
Target:  5'- -aGCUGU-GCCGCGGCuCCUgCCCGGCc -3'
miRNA:   3'- ggUGGCGuCGGCGCCG-GGA-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 121491 0.71 0.300155
Target:  5'- gCCugCGCcGCUGCaGCCC-CaCCAGCAu -3'
miRNA:   3'- -GGugGCGuCGGCGcCGGGaG-GGUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.