miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 608 0.66 0.559252
Target:  5'- -gGCCG-GGCUGCcGCCCUCCCccgGGCc -3'
miRNA:   3'- ggUGGCgUCGGCGcCGGGAGGG---UCGu -5'
3597 5' -64.8 NC_001650.1 + 703 0.68 0.459744
Target:  5'- -gGCCGCccauuGGCCGagaGGagucCCCUCCCAGUu -3'
miRNA:   3'- ggUGGCG-----UCGGCg--CC----GGGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 3510 0.66 0.531341
Target:  5'- gCCGCCGCuccucaccaCGUGGCCCcuaCCGGCc -3'
miRNA:   3'- -GGUGGCGucg------GCGCCGGGag-GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 8873 0.7 0.333942
Target:  5'- aCGCUGCcugggAGCgGCGcGCCCUCCCugAGUAa -3'
miRNA:   3'- gGUGGCG-----UCGgCGC-CGGGAGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 21542 0.69 0.375754
Target:  5'- -gGCCGCGGCUGCGGUggacccgggggucgCCUCCgaGGCc -3'
miRNA:   3'- ggUGGCGUCGGCGCCG--------------GGAGGg-UCGu -5'
3597 5' -64.8 NC_001650.1 + 21743 1.09 0.000616
Target:  5'- uCCACCGCAGCCGCGGCCCUCCCAGCAg -3'
miRNA:   3'- -GGUGGCGUCGGCGCCGGGAGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 21959 0.71 0.306695
Target:  5'- gCGCCGCAGCUGUugcuGCCCccugaucaagugUUCCAGCAg -3'
miRNA:   3'- gGUGGCGUCGGCGc---CGGG------------AGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 21999 0.68 0.451149
Target:  5'- -gGCCuCGGCCG-GcGCCCUCcCCGGCGu -3'
miRNA:   3'- ggUGGcGUCGGCgC-CGGGAG-GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 22987 0.66 0.563006
Target:  5'- cCCGCaCGCGGCCGCuaucuuggcgugcauGguGCCCU-CCAGCc -3'
miRNA:   3'- -GGUG-GCGUCGGCG---------------C--CGGGAgGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 23529 0.68 0.442643
Target:  5'- aCGCCGCAcuGCUGCGcGaCCCUgCCCgaGGCGc -3'
miRNA:   3'- gGUGGCGU--CGGCGC-C-GGGA-GGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 24413 0.7 0.362175
Target:  5'- uCCACCGCcGCUgaggcggaggacaGCGGCaCCU-CCAGCGc -3'
miRNA:   3'- -GGUGGCGuCGG-------------CGCCG-GGAgGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 25233 0.66 0.549898
Target:  5'- aCAUCGaGGCCGCcuGGCCCgaggccaCCAGCc -3'
miRNA:   3'- gGUGGCgUCGGCG--CCGGGag-----GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 26849 0.67 0.522147
Target:  5'- uUCACCG-AGaCCGUGGCCgggUCCAGCu -3'
miRNA:   3'- -GGUGGCgUC-GGCGCCGGga-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 27116 0.68 0.451149
Target:  5'- aCCACCaGCuGGCCGCGGUacagCCUCUCcuuaaAGCu -3'
miRNA:   3'- -GGUGG-CG-UCGGCGCCG----GGAGGG-----UCGu -5'
3597 5' -64.8 NC_001650.1 + 27793 0.71 0.287399
Target:  5'- -aGCUGU-GCCGCGGCuCCUgCCCGGCc -3'
miRNA:   3'- ggUGGCGuCGGCGCCG-GGA-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 29294 0.68 0.459744
Target:  5'- gCACCGuCAGuUCGCGGgCCgcgCCCAGg- -3'
miRNA:   3'- gGUGGC-GUC-GGCGCCgGGa--GGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 30879 0.68 0.425908
Target:  5'- gCC-CCGCGGCgCGCGcGUCCgccCCCAGg- -3'
miRNA:   3'- -GGuGGCGUCG-GCGC-CGGGa--GGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 35656 0.67 0.50395
Target:  5'- aCGCUGCGGUCGUccgaGGUgCgaCCCAGCAg -3'
miRNA:   3'- gGUGGCGUCGGCG----CCGgGa-GGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 35903 0.8 0.074218
Target:  5'- aCC-CCGCGGCCGUGaGCCC-CCCGGCc -3'
miRNA:   3'- -GGuGGCGUCGGCGC-CGGGaGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 42381 0.68 0.451149
Target:  5'- --uCUGCAGCUGCaGCCCcCCCguGGCAg -3'
miRNA:   3'- gguGGCGUCGGCGcCGGGaGGG--UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.