miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 141664 0.67 0.513015
Target:  5'- aCACCcccaGGCCccgaGGCCCUCCguGCGg -3'
miRNA:   3'- gGUGGcg--UCGGcg--CCGGGAGGguCGU- -5'
3597 5' -64.8 NC_001650.1 + 118752 0.67 0.513015
Target:  5'- aCACCGCcccccGCCGCccCCCUCCuCGGUg -3'
miRNA:   3'- gGUGGCGu----CGGCGccGGGAGG-GUCGu -5'
3597 5' -64.8 NC_001650.1 + 55618 0.67 0.513015
Target:  5'- -aGCgGC-GCCGCGcguuuGCCCUCCCucccuAGCAg -3'
miRNA:   3'- ggUGgCGuCGGCGC-----CGGGAGGG-----UCGU- -5'
3597 5' -64.8 NC_001650.1 + 162544 0.67 0.513015
Target:  5'- gUCACUGCAGCC-CaGGCCCcgggCCUGGUc -3'
miRNA:   3'- -GGUGGCGUCGGcG-CCGGGa---GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 87778 0.67 0.50395
Target:  5'- cCCAUCGCGGCCuccuuuccggGCcugGGCUUUCCCuGCu -3'
miRNA:   3'- -GGUGGCGUCGG----------CG---CCGGGAGGGuCGu -5'
3597 5' -64.8 NC_001650.1 + 134330 0.67 0.50395
Target:  5'- cCCGgCGCcccCCGCgGGCCCUCCguGUc -3'
miRNA:   3'- -GGUgGCGuc-GGCG-CCGGGAGGguCGu -5'
3597 5' -64.8 NC_001650.1 + 78801 0.67 0.50395
Target:  5'- gCCGCCGCGaCCGgcgcuCGGCCCUgaaCCUGGUg -3'
miRNA:   3'- -GGUGGCGUcGGC-----GCCGGGA---GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 148793 0.67 0.50395
Target:  5'- gCCACUGgAGCCgGCGuCCCUCCU-GCu -3'
miRNA:   3'- -GGUGGCgUCGG-CGCcGGGAGGGuCGu -5'
3597 5' -64.8 NC_001650.1 + 111190 0.67 0.50395
Target:  5'- -gGCCcagGCGGCUcagGCGGCCCgcgCCCccaGGCAg -3'
miRNA:   3'- ggUGG---CGUCGG---CGCCGGGa--GGG---UCGU- -5'
3597 5' -64.8 NC_001650.1 + 35656 0.67 0.50395
Target:  5'- aCGCUGCGGUCGUccgaGGUgCgaCCCAGCAg -3'
miRNA:   3'- gGUGGCGUCGGCG----CCGgGa-GGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 117496 0.67 0.494955
Target:  5'- -uGCC-CA-CCGCgGGCaCCUCCCAGCu -3'
miRNA:   3'- ggUGGcGUcGGCG-CCG-GGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 67242 0.67 0.494955
Target:  5'- gCCAgCGagAGgCGCGGCCgCUCgUAGCAg -3'
miRNA:   3'- -GGUgGCg-UCgGCGCCGG-GAGgGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 67133 0.67 0.486033
Target:  5'- gCCAuCCGC-GCCcCGGCCCcaugcucCCCGGCc -3'
miRNA:   3'- -GGU-GGCGuCGGcGCCGGGa------GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 128593 0.67 0.486033
Target:  5'- cCCACCGCcccGCCGa-GCCCgugaCCCAGg- -3'
miRNA:   3'- -GGUGGCGu--CGGCgcCGGGa---GGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 136581 0.67 0.486033
Target:  5'- aUCGCCGCAccaGCCccaGGCCCgaagacaaaCCCAGCc -3'
miRNA:   3'- -GGUGGCGU---CGGcg-CCGGGa--------GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 135231 0.67 0.477188
Target:  5'- aCACCuggaGCAGUacaGGCCCgggCCCAGCu -3'
miRNA:   3'- gGUGG----CGUCGgcgCCGGGa--GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 132945 0.67 0.477188
Target:  5'- cCCcCCGCGG-CGCGaGCCCU-CCGGUg -3'
miRNA:   3'- -GGuGGCGUCgGCGC-CGGGAgGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 134151 0.67 0.476308
Target:  5'- gCACUGCGGCCGCcugccggGGUCUggggggcgccCCCAGCu -3'
miRNA:   3'- gGUGGCGUCGGCG-------CCGGGa---------GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 50940 0.68 0.468424
Target:  5'- cCCACCGCGGCC-CuGUCCUUCUGGa- -3'
miRNA:   3'- -GGUGGCGUCGGcGcCGGGAGGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 29294 0.68 0.459744
Target:  5'- gCACCGuCAGuUCGCGGgCCgcgCCCAGg- -3'
miRNA:   3'- gGUGGC-GUC-GGCGCCgGGa--GGGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.