miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 45105 0.69 0.401526
Target:  5'- -gGCUGCGGCuUGCGGCCgcggUUCCCAGgGa -3'
miRNA:   3'- ggUGGCGUCG-GCGCCGG----GAGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 45307 0.69 0.370433
Target:  5'- gCgGCCGCaAGCCGCaGCCCgCUCAGgGg -3'
miRNA:   3'- -GgUGGCG-UCGGCGcCGGGaGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 46236 0.66 0.531341
Target:  5'- -gGCCGCGGCCGCuGUCaa-UCAGCGa -3'
miRNA:   3'- ggUGGCGUCGGCGcCGGgagGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 46576 0.73 0.229982
Target:  5'- gCC-CCGCGGCCgauGCGGCgCCgcgcCCCGGCu -3'
miRNA:   3'- -GGuGGCGUCGG---CGCCG-GGa---GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 47128 0.68 0.451149
Target:  5'- gCCACCGCGaUCGCGaacccCCCcCCCAGCc -3'
miRNA:   3'- -GGUGGCGUcGGCGCc----GGGaGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 49124 0.66 0.548033
Target:  5'- aCCACCGUcagGGCgGCGGgagugaccuccaCCUUCCAGUu -3'
miRNA:   3'- -GGUGGCG---UCGgCGCCg-----------GGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 49395 0.66 0.56865
Target:  5'- cUCGCCcucggcCAGCgCGCGGCCCUCggacaCCAGa- -3'
miRNA:   3'- -GGUGGc-----GUCG-GCGCCGGGAG-----GGUCgu -5'
3597 5' -64.8 NC_001650.1 + 50314 0.67 0.522147
Target:  5'- cCCAaaGCGcGCCuCGuCCCUCCCGGCc -3'
miRNA:   3'- -GGUggCGU-CGGcGCcGGGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 50516 0.69 0.375754
Target:  5'- aCCACCGCgcacgggGGCaaccugagcgagGUGGCCUUCCUGGCGg -3'
miRNA:   3'- -GGUGGCG-------UCGg-----------CGCCGGGAGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 50940 0.68 0.468424
Target:  5'- cCCACCGCGGCC-CuGUCCUUCUGGa- -3'
miRNA:   3'- -GGUGGCGUCGGcGcCGGGAGGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 51026 0.66 0.559252
Target:  5'- gCGCCGgGGCCGCGGUgC-CCgAGa- -3'
miRNA:   3'- gGUGGCgUCGGCGCCGgGaGGgUCgu -5'
3597 5' -64.8 NC_001650.1 + 51210 0.68 0.425908
Target:  5'- gCCGCCGCGcCCGCGcCCCcgUCCCcccGCAg -3'
miRNA:   3'- -GGUGGCGUcGGCGCcGGG--AGGGu--CGU- -5'
3597 5' -64.8 NC_001650.1 + 51660 0.66 0.587558
Target:  5'- aCCACCGUgacGGCCacGCucaGGUUCUCCCuGUAg -3'
miRNA:   3'- -GGUGGCG---UCGG--CG---CCGGGAGGGuCGU- -5'
3597 5' -64.8 NC_001650.1 + 52782 0.74 0.205084
Target:  5'- cUCGCgGCGGCgGCGGCCCUcggggCCCgGGCGc -3'
miRNA:   3'- -GGUGgCGUCGgCGCCGGGA-----GGG-UCGU- -5'
3597 5' -64.8 NC_001650.1 + 52899 0.72 0.251697
Target:  5'- cCCGCUGCGGcCCGagaGGCCCaagUCCCuGCu -3'
miRNA:   3'- -GGUGGCGUC-GGCg--CCGGG---AGGGuCGu -5'
3597 5' -64.8 NC_001650.1 + 53912 0.66 0.565827
Target:  5'- gCCG-CGCucugauuggucgagAGCCGgcUGGCCCUCUCGGCc -3'
miRNA:   3'- -GGUgGCG--------------UCGGC--GCCGGGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 55618 0.67 0.513015
Target:  5'- -aGCgGC-GCCGCGcguuuGCCCUCCCucccuAGCAg -3'
miRNA:   3'- ggUGgCGuCGGCGC-----CGGGAGGG-----UCGU- -5'
3597 5' -64.8 NC_001650.1 + 57410 0.68 0.416865
Target:  5'- -aGCCGCAGCaGCaGGCCUUUguggaggCCAGCAc -3'
miRNA:   3'- ggUGGCGUCGgCG-CCGGGAG-------GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 57769 0.75 0.158056
Target:  5'- cCCAgCCGCAGCUGCaaccacaGGCCCagcCCCAGCc -3'
miRNA:   3'- -GGU-GGCGUCGGCG-------CCGGGa--GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 58134 0.7 0.355515
Target:  5'- gCCGCCccCGGCCGCGcCCUUCCCcguGCAc -3'
miRNA:   3'- -GGUGGc-GUCGGCGCcGGGAGGGu--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.