miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 27811 0.77 0.589042
Target:  5'- -cUGCCCGA---GAGGGCCGAGGCGg -3'
miRNA:   3'- caGCGGGUUguaUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 29062 0.68 0.949034
Target:  5'- -gUGgCCGACGUGGGGgaguACCuGGGCGCg -3'
miRNA:   3'- caGCgGGUUGUAUUUC----UGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 29317 0.68 0.96423
Target:  5'- --aGCaCCAGCAUGAGGAa-GAGGCa- -3'
miRNA:   3'- cagCG-GGUUGUAUUUCUggCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 30408 0.67 0.978355
Target:  5'- uGUCuGCCC-GCAgAGGGcGCCcugGAGGCGCu -3'
miRNA:   3'- -CAG-CGGGuUGUaUUUC-UGG---CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 30552 0.72 0.816765
Target:  5'- aUCGUUCAACAgagaaagAGAGACCGucuucucGGCGCc -3'
miRNA:   3'- cAGCGGGUUGUa------UUUCUGGCu------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 31728 0.67 0.967469
Target:  5'- -cCGCCCAuccc--AGACCGAcaaacuGGCGCc -3'
miRNA:   3'- caGCGGGUuguauuUCUGGCU------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 35636 0.66 0.98628
Target:  5'- -gCGaCCCAGCAgcuUGAGGACCGuccCGCu -3'
miRNA:   3'- caGC-GGGUUGU---AUUUCUGGCuccGCG- -5'
3599 5' -52.7 NC_001650.1 + 36085 0.67 0.978355
Target:  5'- -cCGCCCcGCGUGAaacuccAGGucccCCGcGGCGCa -3'
miRNA:   3'- caGCGGGuUGUAUU------UCU----GGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 36472 0.67 0.97593
Target:  5'- aUCcCCCAccuguucagGCA--GGGACCGGGGgGCa -3'
miRNA:   3'- cAGcGGGU---------UGUauUUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 37087 0.8 0.397688
Target:  5'- aGUCGCCCGGCccGAGGugCG-GGUGCa -3'
miRNA:   3'- -CAGCGGGUUGuaUUUCugGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 39534 0.66 0.984549
Target:  5'- -cCGCCagaUAGCAUGcagaaGAGACCGAaacuucGGUGCu -3'
miRNA:   3'- caGCGG---GUUGUAU-----UUCUGGCU------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 39792 0.67 0.967469
Target:  5'- gGUgGgCCAccGCGUGGAG-CCuGGGCGCa -3'
miRNA:   3'- -CAgCgGGU--UGUAUUUCuGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 42549 0.68 0.96423
Target:  5'- cGUCacaCCCGAgGUagugaucugcuGAAGGCUGGGGUGCu -3'
miRNA:   3'- -CAGc--GGGUUgUA-----------UUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 45984 0.68 0.95709
Target:  5'- -gCGCgCCGAUu----GGCCGAGaGCGCa -3'
miRNA:   3'- caGCG-GGUUGuauuuCUGGCUC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 46341 0.69 0.944653
Target:  5'- -gCGCUCGGguUAAuccccgaGCCGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguAUUuc-----UGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 46504 0.71 0.865822
Target:  5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3'
miRNA:   3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 50980 0.72 0.825415
Target:  5'- -cUGCCCGugugcgagcuGCGgGGGGACgGGGGCGCg -3'
miRNA:   3'- caGCGGGU----------UGUaUUUCUGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 51012 0.72 0.833885
Target:  5'- -gUGCCCGAgAaGAAGACCuGGGGCuGCu -3'
miRNA:   3'- caGCGGGUUgUaUUUCUGG-CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 51525 0.68 0.96423
Target:  5'- --gGCCCAgccacuggccacGCAgAGGGACUGAGGCuGUg -3'
miRNA:   3'- cagCGGGU------------UGUaUUUCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 53535 0.67 0.967469
Target:  5'- -cUGCCCGGCcgGguGAGAUCGGGGgGa -3'
miRNA:   3'- caGCGGGUUGuaU--UUCUGGCUCCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.