miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 291 0.67 0.978355
Target:  5'- -gCGCCCcc--UGccGGCCGAGGCGa -3'
miRNA:   3'- caGCGGGuuguAUuuCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 1758 0.66 0.987858
Target:  5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3'
miRNA:   3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 2624 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 2768 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 4744 0.68 0.96423
Target:  5'- -gUGCCCGGCucgggGAAGACCuAGGC-Cg -3'
miRNA:   3'- caGCGGGUUGua---UUUCUGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 5976 0.66 0.984549
Target:  5'- -cCGCUCAcccuaucagaugGCcaAUAAAGGCCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 6256 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 6364 0.7 0.894337
Target:  5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 6898 0.71 0.88053
Target:  5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3'
miRNA:   3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 7230 0.75 0.681813
Target:  5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3'
miRNA:   3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 11223 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 11449 0.7 0.919123
Target:  5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3'
miRNA:   3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 16174 0.7 0.919123
Target:  5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3'
miRNA:   3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 17714 0.69 0.93467
Target:  5'- -gCGCCCGucgACAUuuGGGCCugagaaaauggagGGGGCGUg -3'
miRNA:   3'- caGCGGGU---UGUAuuUCUGG-------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 22408 0.69 0.924716
Target:  5'- -aCGuCCCGAUcgAUAAAGACCcuggaggucGGGGCGUa -3'
miRNA:   3'- caGC-GGGUUG--UAUUUCUGG---------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 22493 0.67 0.970201
Target:  5'- -cCGCCCGGCAU--GGGCCccgccucGAGGCc- -3'
miRNA:   3'- caGCGGGUUGUAuuUCUGG-------CUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 22575 0.68 0.960772
Target:  5'- uGUCGCCCGucc--GGGGCgGcGGCGCc -3'
miRNA:   3'- -CAGCGGGUuguauUUCUGgCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 22805 1.11 0.005187
Target:  5'- aGUCGCCCAACAUAAAGACCGAGGCGCc -3'
miRNA:   3'- -CAGCGGGUUGUAUUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 23406 0.7 0.906588
Target:  5'- --gGCCCGGCGUcgcugcuguuguaGGGGACCcuggaGGGCGCg -3'
miRNA:   3'- cagCGGGUUGUA-------------UUUCUGGc----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 24093 0.69 0.926884
Target:  5'- cUUGCCCGgggaggcgggcagaaACAggauGACCGAGcGCGCc -3'
miRNA:   3'- cAGCGGGU---------------UGUauuuCUGGCUC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.