miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 22805 1.11 0.005187
Target:  5'- aGUCGCCCAACAUAAAGACCGAGGCGCc -3'
miRNA:   3'- -CAGCGGGUUGUAUUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 81597 0.82 0.310778
Target:  5'- gGUCGCCCGACGcGAGGucGCCGcacaGGGCGCg -3'
miRNA:   3'- -CAGCGGGUUGUaUUUC--UGGC----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 37087 0.8 0.397688
Target:  5'- aGUCGCCCGGCccGAGGugCG-GGUGCa -3'
miRNA:   3'- -CAGCGGGUUGuaUUUCugGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 164401 0.79 0.469935
Target:  5'- cUCGCCCAGCcugAGAGACaggcgCGGGGCGUg -3'
miRNA:   3'- cAGCGGGUUGua-UUUCUG-----GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 58925 0.79 0.469935
Target:  5'- -cCGCCCAGau---AGACUGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguauuUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121245 0.77 0.5574
Target:  5'- cGUCGUCCAcCAUGGAGAagauuucCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGGUuGUAUUUCU-------GGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 76866 0.77 0.578792
Target:  5'- aGUgGCCCAuguACAUccuGGGGGCCGAgaaGGCGCg -3'
miRNA:   3'- -CAgCGGGU---UGUA---UUUCUGGCU---CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 27811 0.77 0.589042
Target:  5'- -cUGCCCGA---GAGGGCCGAGGCGg -3'
miRNA:   3'- caGCGGGUUguaUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 108892 0.76 0.61376
Target:  5'- aGUCGCCCAGCGcGGccagguccagcAGGCCGugcaggucgggggacAGGCGCg -3'
miRNA:   3'- -CAGCGGGUUGUaUU-----------UCUGGC---------------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 158281 0.75 0.670529
Target:  5'- -aUGCCCAgggGCAUGGcguugucGGGCCGGGGCaGCa -3'
miRNA:   3'- caGCGGGU---UGUAUU-------UCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 173937 0.75 0.681813
Target:  5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3'
miRNA:   3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 7230 0.75 0.681813
Target:  5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3'
miRNA:   3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 58879 0.74 0.72233
Target:  5'- -gCGUCCAGCGUggcGAGGACCaGGGCGg -3'
miRNA:   3'- caGCGGGUUGUA---UUUCUGGcUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 66917 0.74 0.732285
Target:  5'- --gGCCgGggaGCAU-GGGGCCGGGGCGCg -3'
miRNA:   3'- cagCGGgU---UGUAuUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 111092 0.74 0.741169
Target:  5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3'
miRNA:   3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 125935 0.74 0.75192
Target:  5'- --gGCCCggUuuuucuGGCCGAGGCGCc -3'
miRNA:   3'- cagCGGGuuGuauuu-CUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 79902 0.73 0.761581
Target:  5'- cUCGCCCGagacGCAggcccuGACCcAGGCGCa -3'
miRNA:   3'- cAGCGGGU----UGUauuu--CUGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 73377 0.73 0.771125
Target:  5'- --aGCCCcACA--AAGACCGAGGUGg -3'
miRNA:   3'- cagCGGGuUGUauUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 94466 0.73 0.771125
Target:  5'- -aCGCCCucGACc---AGACCGAGGCGg -3'
miRNA:   3'- caGCGGG--UUGuauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 143114 0.73 0.771125
Target:  5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3'
miRNA:   3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.