miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 154399 0.7 0.887548
Target:  5'- --aGCCCGGCucuaaGUGAcucuccAGGCgCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUG-----UAUU------UCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155261 0.72 0.825415
Target:  5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3'
miRNA:   3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 50980 0.72 0.825415
Target:  5'- -cUGCCCGugugcgagcuGCGgGGGGACgGGGGCGCg -3'
miRNA:   3'- caGCGGGU----------UGUaUUUCUGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 85011 0.71 0.865822
Target:  5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3'
miRNA:   3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129869 0.71 0.865822
Target:  5'- --aGCUCAACcgGcAGGCCGAGGcCGUg -3'
miRNA:   3'- cagCGGGUUGuaUuUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 46504 0.71 0.865822
Target:  5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3'
miRNA:   3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 60600 0.71 0.88053
Target:  5'- -cCGCCCGAa--AAAGuCUGGGGCGUa -3'
miRNA:   3'- caGCGGGUUguaUUUCuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 143047 0.71 0.88053
Target:  5'- aUCGCgggCCAcGCGgAGGGcGCCGAGGCGCu -3'
miRNA:   3'- cAGCG---GGU-UGUaUUUC-UGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 136080 0.7 0.887548
Target:  5'- -gCGgCCGcCAUGAAGGCgGGGGCGg -3'
miRNA:   3'- caGCgGGUuGUAUUUCUGgCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 132978 0.72 0.825415
Target:  5'- cUCGCCCGcgcgGgAUAGAGACacgcugggagGGGGCGCg -3'
miRNA:   3'- cAGCGGGU----UgUAUUUCUGg---------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121304 0.72 0.807945
Target:  5'- -cCGCCCGAgAUAGAGGgCGuGcGCGCc -3'
miRNA:   3'- caGCGGGUUgUAUUUCUgGCuC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 83516 0.72 0.807945
Target:  5'- -gCGCCCGAUaggugggagagGUGcAGGCaCGGGGCGCc -3'
miRNA:   3'- caGCGGGUUG-----------UAUuUCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 58925 0.79 0.469935
Target:  5'- -cCGCCCAGau---AGACUGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguauuUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 164401 0.79 0.469935
Target:  5'- cUCGCCCAGCcugAGAGACaggcgCGGGGCGUg -3'
miRNA:   3'- cAGCGGGUUGua-UUUCUG-----GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 158281 0.75 0.670529
Target:  5'- -aUGCCCAgggGCAUGGcguugucGGGCCGGGGCaGCa -3'
miRNA:   3'- caGCGGGU---UGUAUU-------UCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 7230 0.75 0.681813
Target:  5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3'
miRNA:   3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 173937 0.75 0.681813
Target:  5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3'
miRNA:   3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 66917 0.74 0.732285
Target:  5'- --gGCCgGggaGCAU-GGGGCCGGGGCGCg -3'
miRNA:   3'- cagCGGgU---UGUAuUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 94466 0.73 0.771125
Target:  5'- -aCGCCCucGACc---AGACCGAGGCGg -3'
miRNA:   3'- caGCGGG--UUGuauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 132378 0.73 0.774908
Target:  5'- uGUCGCCCucggccgagcucuuuGACGgccuGGCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGG---------------UUGUauuuCUGGCuCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.