Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 80243 | 0.66 | 0.982458 |
Target: 5'- -cCGCCUucuACGUGAacGGGCUgcugcugGAGGCGUg -3' miRNA: 3'- caGCGGGu--UGUAUU--UCUGG-------CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 120594 | 0.66 | 0.984549 |
Target: 5'- gGUCGCUCAGacuucucAGAGACagCGGGGCGg -3' miRNA: 3'- -CAGCGGGUUgua----UUUCUG--GCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 92492 | 0.66 | 0.984549 |
Target: 5'- -aCGUCCAucuACAUcccGGAcuuuuCCGAGGUGCa -3' miRNA: 3'- caGCGGGU---UGUAuu-UCU-----GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 131772 | 0.66 | 0.989293 |
Target: 5'- --gGCCCGAgGU--GGACCacuugaAGGCGCu -3' miRNA: 3'- cagCGGGUUgUAuuUCUGGc-----UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 129134 | 0.66 | 0.989293 |
Target: 5'- -gCGCCCGGgGccGAGGACaCGGGG-GCg -3' miRNA: 3'- caGCGGGUUgUa-UUUCUG-GCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 82999 | 0.66 | 0.987858 |
Target: 5'- aUCGCCagggGGC-UGGAGGCgGAGGUGa -3' miRNA: 3'- cAGCGGg---UUGuAUUUCUGgCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 100314 | 0.66 | 0.982657 |
Target: 5'- aUCGCggCGGCGUGcGAGGCCGuccgcAGGUGCg -3' miRNA: 3'- cAGCGg-GUUGUAU-UUCUGGC-----UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 131469 | 0.66 | 0.982657 |
Target: 5'- -cCGCgCCAGCA---GGAUCGGGuccGCGCg -3' miRNA: 3'- caGCG-GGUUGUauuUCUGGCUC---CGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 172683 | 0.66 | 0.984549 |
Target: 5'- -cCGCUCAcccuaucagaugGCcaAUAAAGGCCGGGGuUGCu -3' miRNA: 3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 129973 | 0.66 | 0.989293 |
Target: 5'- -gCGCCCGugGcgcGGGCCcuGAGGCuGCu -3' miRNA: 3'- caGCGGGUugUauuUCUGG--CUCCG-CG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 135600 | 0.66 | 0.989293 |
Target: 5'- -cCGCCaguAUAUAAGGGCgGuGGGUGCc -3' miRNA: 3'- caGCGGgu-UGUAUUUCUGgC-UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 111153 | 0.66 | 0.982657 |
Target: 5'- --gGCCCucuCAgggAGGGugUGAGGCGg -3' miRNA: 3'- cagCGGGuu-GUa--UUUCugGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 119844 | 0.66 | 0.98526 |
Target: 5'- -gCGCCCAgcccgcagacccugaACAgggagaccgggcUGAAGAugguguccaCCGAGGUGCa -3' miRNA: 3'- caGCGGGU---------------UGU------------AUUUCU---------GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 118548 | 0.66 | 0.989293 |
Target: 5'- -cUGCCgAGCGcau-GACCGGgguGGCGCa -3' miRNA: 3'- caGCGGgUUGUauuuCUGGCU---CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 79602 | 0.66 | 0.982657 |
Target: 5'- -cCGCCCGGgGgcgcGA-CGGGGCGCg -3' miRNA: 3'- caGCGGGUUgUauuuCUgGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 74063 | 0.66 | 0.979942 |
Target: 5'- -cCGCCCAGCcugGUGAuguacucguucaccAGGCCGuacAGGcCGCg -3' miRNA: 3'- caGCGGGUUG---UAUU--------------UCUGGC---UCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 96461 | 0.66 | 0.984549 |
Target: 5'- gGUCGCcacCCAGgAUGAccagcGACCcgGGGGCGCc -3' miRNA: 3'- -CAGCG---GGUUgUAUUu----CUGG--CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109392 | 0.66 | 0.982853 |
Target: 5'- -cCGCCCcGCGUAcggcucgucccacucGGGCCGGGG-GCa -3' miRNA: 3'- caGCGGGuUGUAUu--------------UCUGGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 132479 | 0.66 | 0.984549 |
Target: 5'- cUCGCCCccuGAguUAGuuuuugGGGCCcaGGGGCGCu -3' miRNA: 3'- cAGCGGG---UUguAUU------UCUGG--CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 168465 | 0.66 | 0.987858 |
Target: 5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3' miRNA: 3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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