miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
360 5' -62.5 AC_000011.1 + 11944 0.71 0.107637
Target:  5'- gGCCcGGCGGCUGGg-CUGCcAGUGCa -3'
miRNA:   3'- aCGGcCUGCCGACCgaGACG-UCGCGg -5'
360 5' -62.5 AC_000011.1 + 21457 0.66 0.241889
Target:  5'- -cUCGG-UGGCcagGGCgCUGCGGCGCa -3'
miRNA:   3'- acGGCCuGCCGa--CCGaGACGUCGCGg -5'
360 5' -62.5 AC_000011.1 + 22627 0.66 0.241889
Target:  5'- cUGCaCGGGugcaccgaGGCcgagGGCaagCUGCGGUGCCu -3'
miRNA:   3'- -ACG-GCCUg-------CCGa---CCGa--GACGUCGCGG- -5'
360 5' -62.5 AC_000011.1 + 16007 0.66 0.241889
Target:  5'- gGCgGGACauGCUGGCgauggccgCUGCcGcCGCCg -3'
miRNA:   3'- aCGgCCUGc-CGACCGa-------GACGuC-GCGG- -5'
360 5' -62.5 AC_000011.1 + 25755 0.67 0.206924
Target:  5'- cGCCGaggacGACGGuCUGGCg--GCGGCuGCUu -3'
miRNA:   3'- aCGGC-----CUGCC-GACCGagaCGUCG-CGG- -5'
360 5' -62.5 AC_000011.1 + 15831 0.68 0.196277
Target:  5'- cGCCGGGCGaugcgccgccGCcGGCUCU-UGGCGCg -3'
miRNA:   3'- aCGGCCUGC----------CGaCCGAGAcGUCGCGg -5'
360 5' -62.5 AC_000011.1 + 12219 0.68 0.196277
Target:  5'- gGCCGaGAgcCGGUUGGC-CUGgGGCuGCUg -3'
miRNA:   3'- aCGGC-CU--GCCGACCGaGACgUCG-CGG- -5'
360 5' -62.5 AC_000011.1 + 34268 0.68 0.181206
Target:  5'- gGCgGGGCGGUgcUGGCcCUGUGGUuCCg -3'
miRNA:   3'- aCGgCCUGCCG--ACCGaGACGUCGcGG- -5'
360 5' -62.5 AC_000011.1 + 34730 0.68 0.176415
Target:  5'- cGCCGc-CGGCgaucGGUg-UGCAGCGCCc -3'
miRNA:   3'- aCGGCcuGCCGa---CCGagACGUCGCGG- -5'
360 5' -62.5 AC_000011.1 + 11551 0.69 0.149973
Target:  5'- aGCCaG-CGGCccucgGGCUCggugauauucaGCAGCGCCu -3'
miRNA:   3'- aCGGcCuGCCGa----CCGAGa----------CGUCGCGG- -5'
360 5' -62.5 AC_000011.1 + 17092 0.69 0.149973
Target:  5'- cGCaccaGGGCGGCaggGGUggUUGCAGCGgCg -3'
miRNA:   3'- aCGg---CCUGCCGa--CCGa-GACGUCGCgG- -5'
360 5' -62.5 AC_000011.1 + 10967 0.71 0.115093
Target:  5'- gGCCGcGGCGGUcgUGGCUggaaguugCUGCuggggcgggggcagaAGCGCCg -3'
miRNA:   3'- aCGGC-CUGCCG--ACCGA--------GACG---------------UCGCGG- -5'
360 5' -62.5 AC_000011.1 + 23508 0.71 0.11287
Target:  5'- gGCUGGGCGGCggGGCgguuaagcuuucauUCUGCuGCuGCUg -3'
miRNA:   3'- aCGGCCUGCCGa-CCG--------------AGACGuCG-CGG- -5'
360 5' -62.5 AC_000011.1 + 12113 1.11 6.5e-05
Target:  5'- aUGCCGGACGGCUGGCUCUGCAGCGCCg -3'
miRNA:   3'- -ACGGCCUGCCGACCGAGACGUCGCGG- -5'
360 5' -62.5 AC_000011.1 + 8473 0.74 0.066514
Target:  5'- cGCCGGGCGGCaggGGCggCU-CGGgGCCc -3'
miRNA:   3'- aCGGCCUGCCGa--CCGa-GAcGUCgCGG- -5'
360 5' -62.5 AC_000011.1 + 34685 0.66 0.261149
Target:  5'- cGCCGG-CGGC-GG-UCU-CGGCGCUu -3'
miRNA:   3'- aCGGCCuGCCGaCCgAGAcGUCGCGG- -5'
360 5' -62.5 AC_000011.1 + 15771 0.66 0.261149
Target:  5'- aGCCGG-CGGC-GGCgcaUCgcccgGCGGCaCCg -3'
miRNA:   3'- aCGGCCuGCCGaCCG---AGa----CGUCGcGG- -5'
360 5' -62.5 AC_000011.1 + 11138 0.66 0.254593
Target:  5'- cGCgGGGCGGgaG---CUGCGGCGCg -3'
miRNA:   3'- aCGgCCUGCCgaCcgaGACGUCGCGg -5'
360 5' -62.5 AC_000011.1 + 8505 0.66 0.248174
Target:  5'- gGCagGGGCGGCaggGGCacguCGGCGCCg -3'
miRNA:   3'- aCGg-CCUGCCGa--CCGagacGUCGCGG- -5'
360 5' -62.5 AC_000011.1 + 23263 0.66 0.244387
Target:  5'- uUGgCGGAUGGCUGGCagagccccuuccgcgUUcgggGguGCGCUc -3'
miRNA:   3'- -ACgGCCUGCCGACCG---------------AGa---CguCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.