miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 3' -54.4 NC_001650.1 + 57901 0.7 0.827839
Target:  5'- aCGAGGaGUUc-GAGGGCCCCCUCUu- -3'
miRNA:   3'- gGCUUC-CAGaaCUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 59862 0.72 0.706296
Target:  5'- gCCGAGGcGUCcgcGAAGGaCCCCUCCAGc -3'
miRNA:   3'- -GGCUUC-CAGaa-CUUCUgGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 59939 0.73 0.672956
Target:  5'- gCGAGGG-CUUGGacaggagcagguucAGGCCCCgCUCCAGg -3'
miRNA:   3'- gGCUUCCaGAACU--------------UCUGGGG-GAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 60099 0.67 0.949487
Target:  5'- gCCGAGGGUCUggcccGACCCgCCgcCCGc -3'
miRNA:   3'- -GGCUUCCAGAacuu-CUGGG-GGa-GGUu -5'
3600 3' -54.4 NC_001650.1 + 69266 0.66 0.964461
Target:  5'- gCCGcGAGGUCUcccUGGAGGCCgagggCUUCCAc -3'
miRNA:   3'- -GGC-UUCCAGA---ACUUCUGGg----GGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 77156 0.77 0.46644
Target:  5'- aUGAGcucGGUggUGAAGGCCCCCUCCAu -3'
miRNA:   3'- gGCUU---CCAgaACUUCUGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 83821 0.72 0.759225
Target:  5'- cUCGuuaAAGGUCUUGAcgcacucguguuuggAGACCgCCUCCAc -3'
miRNA:   3'- -GGC---UUCCAGAACU---------------UCUGGgGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 84139 0.66 0.961052
Target:  5'- aCCGGuuucGGUC-UGA--GCCCUCUCCAc -3'
miRNA:   3'- -GGCUu---CCAGaACUucUGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 87986 0.66 0.957423
Target:  5'- ---uAGGUUggGcGGGCCCCCUCCc- -3'
miRNA:   3'- ggcuUCCAGaaCuUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 88635 0.71 0.76493
Target:  5'- cCUGAGGGUCUcgGGuAGuacuCCCCCUCCc- -3'
miRNA:   3'- -GGCUUCCAGAa-CU-UCu---GGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 88934 0.74 0.635157
Target:  5'- gCCGggGG-CUUccccGAGGAgCCCCCUCCc- -3'
miRNA:   3'- -GGCuuCCaGAA----CUUCU-GGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 92601 0.76 0.494845
Target:  5'- gUGGAGGcCUUGAAGGCCCCgCUCUc- -3'
miRNA:   3'- gGCUUCCaGAACUUCUGGGG-GAGGuu -5'
3600 3' -54.4 NC_001650.1 + 93001 0.68 0.895666
Target:  5'- cCCuGAGGaCgcgGAGGGCCCCUUCCu- -3'
miRNA:   3'- -GGcUUCCaGaa-CUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 93952 0.71 0.792778
Target:  5'- cUCGAGGGUCUUGAgcaGGugCCCgaaCUCUGGg -3'
miRNA:   3'- -GGCUUCCAGAACU---UCugGGG---GAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 99443 0.68 0.914308
Target:  5'- aCCG-AGGUgCgaGggGACCCCUUaCCGg -3'
miRNA:   3'- -GGCuUCCA-GaaCuuCUGGGGGA-GGUu -5'
3600 3' -54.4 NC_001650.1 + 102871 0.74 0.645393
Target:  5'- uCCGGGuGGUCaggUUGAGGGgCCCCUCCu- -3'
miRNA:   3'- -GGCUU-CCAG---AACUUCUgGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 107530 0.73 0.696251
Target:  5'- cCCGggGGUCUccgugGggGACCUgCUgCAGa -3'
miRNA:   3'- -GGCuuCCAGAa----CuuCUGGGgGAgGUU- -5'
3600 3' -54.4 NC_001650.1 + 109597 0.66 0.957423
Target:  5'- -aGggGGUCUccGAGGAagCCCC-CCAAa -3'
miRNA:   3'- ggCuuCCAGAa-CUUCUg-GGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 109805 0.74 0.624918
Target:  5'- uUGggGGgCUUccucGGAGACCCCCUCCc- -3'
miRNA:   3'- gGCuuCCaGAA----CUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 112684 0.68 0.902114
Target:  5'- gCGAGGGUUUaUGAauagAGACCaCCCUCUc- -3'
miRNA:   3'- gGCUUCCAGA-ACU----UCUGG-GGGAGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.