miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 3' -54.4 NC_001650.1 + 4681 0.7 0.852296
Target:  5'- uCCgGggGGUCUUaAAGACCCUCUaggaCCAc -3'
miRNA:   3'- -GG-CuuCCAGAAcUUCUGGGGGA----GGUu -5'
3600 3' -54.4 NC_001650.1 + 4887 0.73 0.676007
Target:  5'- -aGAGGGUCUUuAAGACCCCCcggacccCCAAa -3'
miRNA:   3'- ggCUUCCAGAAcUUCUGGGGGa------GGUU- -5'
3600 3' -54.4 NC_001650.1 + 5847 0.7 0.810632
Target:  5'- cCCGggGGUCUaaGggGGCCgCCCacUCUAc -3'
miRNA:   3'- -GGCuuCCAGAa-CuuCUGG-GGG--AGGUu -5'
3600 3' -54.4 NC_001650.1 + 10583 0.66 0.961052
Target:  5'- cCCGggGGUCUcaaaugcgGguGGgCCCCUCUu- -3'
miRNA:   3'- -GGCuuCCAGAa-------CuuCUgGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 14127 0.72 0.755399
Target:  5'- cCCGggGGUCcagGggGGCgCCUCUCUc- -3'
miRNA:   3'- -GGCuuCCAGaa-CuuCUG-GGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 22045 0.73 0.690197
Target:  5'- aCCGcGAGGaUCUUGggGAuggggguggucgccuCCCCCUCCc- -3'
miRNA:   3'- -GGC-UUCC-AGAACuuCU---------------GGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 23191 1.08 0.00552
Target:  5'- gCCGAAGGUCUUGAAGACCCCCUCCAAa -3'
miRNA:   3'- -GGCUUCCAGAACUUCUGGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 23923 0.67 0.935839
Target:  5'- -aGGAGGUCacguuacaGGAGACCCCCgcgUCCu- -3'
miRNA:   3'- ggCUUCCAGaa------CUUCUGGGGG---AGGuu -5'
3600 3' -54.4 NC_001650.1 + 24369 0.68 0.925012
Target:  5'- cCCGggGGUCUcgGAcgucAGAaaacccaugggguCCCCgUCCAGc -3'
miRNA:   3'- -GGCuuCCAGAa-CU----UCU-------------GGGGgAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 24978 0.67 0.935839
Target:  5'- aCCuGGGGUUc--GGGGCCCCCUCCc- -3'
miRNA:   3'- -GGcUUCCAGaacUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 26734 0.68 0.908329
Target:  5'- gUGGAGGUUgcccagGAGGgacGCCUCCUCCAc -3'
miRNA:   3'- gGCUUCCAGaa----CUUC---UGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 28126 0.66 0.964461
Target:  5'- cCCGcuauguccAGGUCgUUGuAGGCCCCCgCCAc -3'
miRNA:   3'- -GGCu-------UCCAG-AACuUCUGGGGGaGGUu -5'
3600 3' -54.4 NC_001650.1 + 28742 0.68 0.895666
Target:  5'- uCCGAccuGGGUCUUGcAGGAcacaaacucCCCCCgggcggCCGAg -3'
miRNA:   3'- -GGCU---UCCAGAAC-UUCU---------GGGGGa-----GGUU- -5'
3600 3' -54.4 NC_001650.1 + 30200 0.73 0.65562
Target:  5'- cCUGggGGUCcUGAcGGACCUCCUCUc- -3'
miRNA:   3'- -GGCuuCCAGaACU-UCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 35216 0.68 0.914308
Target:  5'- gUGggGGaCaaGGAGACCCCCaUCCu- -3'
miRNA:   3'- gGCuuCCaGaaCUUCUGGGGG-AGGuu -5'
3600 3' -54.4 NC_001650.1 + 42030 0.69 0.860057
Target:  5'- uUGAAGGaag-GggGACCCCCgacUCCAAc -3'
miRNA:   3'- gGCUUCCagaaCuuCUGGGGG---AGGUU- -5'
3600 3' -54.4 NC_001650.1 + 47510 0.71 0.783628
Target:  5'- gUGggGGUUUgGggGACCCCC-CUGAg -3'
miRNA:   3'- gGCuuCCAGAaCuuCUGGGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 48241 0.77 0.46644
Target:  5'- uCCGAGGGUCUcgagGggGGCUgCUUCCAGg -3'
miRNA:   3'- -GGCUUCCAGAa---CuuCUGGgGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 48330 0.71 0.76493
Target:  5'- gCGggGGUCau--GGACCCCCUggCCAu -3'
miRNA:   3'- gGCuuCCAGaacuUCUGGGGGA--GGUu -5'
3600 3' -54.4 NC_001650.1 + 52836 0.68 0.914308
Target:  5'- gCGcGAGGUgccGAGGACCCCCgggCCAGu -3'
miRNA:   3'- gGC-UUCCAgaaCUUCUGGGGGa--GGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.