miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 3' -54.4 NC_001650.1 + 87986 0.66 0.957423
Target:  5'- ---uAGGUUggGcGGGCCCCCUCCc- -3'
miRNA:   3'- ggcuUCCAGaaCuUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 35216 0.68 0.914308
Target:  5'- gUGggGGaCaaGGAGACCCCCaUCCu- -3'
miRNA:   3'- gGCuuCCaGaaCUUCUGGGGG-AGGuu -5'
3600 3' -54.4 NC_001650.1 + 99443 0.68 0.914308
Target:  5'- aCCG-AGGUgCgaGggGACCCCUUaCCGg -3'
miRNA:   3'- -GGCuUCCA-GaaCuuCUGGGGGA-GGUu -5'
3600 3' -54.4 NC_001650.1 + 131689 0.68 0.920049
Target:  5'- gUGGAGGUgCUcagGAccguGGCCCCCUCCc- -3'
miRNA:   3'- gGCUUCCA-GAa--CUu---CUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 146050 0.68 0.920049
Target:  5'- aCCaGAgcAGcUCUUcGAGGAcCCCCCUCCAGa -3'
miRNA:   3'- -GG-CU--UCcAGAA-CUUCU-GGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 24978 0.67 0.935839
Target:  5'- aCCuGGGGUUc--GGGGCCCCCUCCc- -3'
miRNA:   3'- -GGcUUCCAGaacUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 60099 0.67 0.949487
Target:  5'- gCCGAGGGUCUggcccGACCCgCCgcCCGc -3'
miRNA:   3'- -GGCUUCCAGAacuu-CUGGG-GGa-GGUu -5'
3600 3' -54.4 NC_001650.1 + 120983 0.67 0.949487
Target:  5'- uCCGu-GGUCacGGAGACCuCCCUCa-- -3'
miRNA:   3'- -GGCuuCCAGaaCUUCUGG-GGGAGguu -5'
3600 3' -54.4 NC_001650.1 + 109597 0.66 0.957423
Target:  5'- -aGggGGUCUccGAGGAagCCCC-CCAAa -3'
miRNA:   3'- ggCuuCCAGAa-CUUCUg-GGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 93001 0.68 0.895666
Target:  5'- cCCuGAGGaCgcgGAGGGCCCCUUCCu- -3'
miRNA:   3'- -GGcUUCCaGaa-CUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 42030 0.69 0.860057
Target:  5'- uUGAAGGaag-GggGACCCCCgacUCCAAc -3'
miRNA:   3'- gGCUUCCagaaCuuCUGGGGG---AGGUU- -5'
3600 3' -54.4 NC_001650.1 + 171388 0.7 0.852296
Target:  5'- uCCgGggGGUCUUaAAGACCCUCUaggaCCAc -3'
miRNA:   3'- -GG-CuuCCAGAAcUUCUGGGGGA----GGUu -5'
3600 3' -54.4 NC_001650.1 + 77156 0.77 0.46644
Target:  5'- aUGAGcucGGUggUGAAGGCCCCCUCCAu -3'
miRNA:   3'- gGCUU---CCAgaACUUCUGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 92601 0.76 0.494845
Target:  5'- gUGGAGGcCUUGAAGGCCCCgCUCUc- -3'
miRNA:   3'- gGCUUCCaGAACUUCUGGGG-GAGGuu -5'
3600 3' -54.4 NC_001650.1 + 30200 0.73 0.65562
Target:  5'- cCUGggGGUCcUGAcGGACCUCCUCUc- -3'
miRNA:   3'- -GGCuuCCAGaACU-UCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 59939 0.73 0.672956
Target:  5'- gCGAGGG-CUUGGacaggagcagguucAGGCCCCgCUCCAGg -3'
miRNA:   3'- gGCUUCCaGAACU--------------UCUGGGG-GAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 47510 0.71 0.783628
Target:  5'- gUGggGGUUUgGggGACCCCC-CUGAg -3'
miRNA:   3'- gGCuuCCAGAaCuuCUGGGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 124374 0.7 0.841095
Target:  5'- gCCGggGGUCgcgcccaugagcGAGGACCgCCCggccUCCGAa -3'
miRNA:   3'- -GGCuuCCAGaa----------CUUCUGG-GGG----AGGUU- -5'
3600 3' -54.4 NC_001650.1 + 117168 0.7 0.844334
Target:  5'- aCGucaGAGGg---GGAGACCCUCUCCAGa -3'
miRNA:   3'- gGC---UUCCagaaCUUCUGGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 4681 0.7 0.852296
Target:  5'- uCCgGggGGUCUUaAAGACCCUCUaggaCCAc -3'
miRNA:   3'- -GG-CuuCCAGAAcUUCUGGGGGA----GGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.