miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 3' -54.4 NC_001650.1 + 23191 1.08 0.00552
Target:  5'- gCCGAAGGUCUUGAAGACCCCCUCCAAa -3'
miRNA:   3'- -GGCUUCCAGAACUUCUGGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 48241 0.77 0.46644
Target:  5'- uCCGAGGGUCUcgagGggGGCUgCUUCCAGg -3'
miRNA:   3'- -GGCUUCCAGAa---CuuCUGGgGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 77156 0.77 0.46644
Target:  5'- aUGAGcucGGUggUGAAGGCCCCCUCCAu -3'
miRNA:   3'- gGCUU---CCAgaACUUCUGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 92601 0.76 0.494845
Target:  5'- gUGGAGGcCUUGAAGGCCCCgCUCUc- -3'
miRNA:   3'- gGCUUCCaGAACUUCUGGGG-GAGGuu -5'
3600 3' -54.4 NC_001650.1 + 109805 0.74 0.624918
Target:  5'- uUGggGGgCUUccucGGAGACCCCCUCCc- -3'
miRNA:   3'- gGCuuCCaGAA----CUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 88934 0.74 0.635157
Target:  5'- gCCGggGG-CUUccccGAGGAgCCCCCUCCc- -3'
miRNA:   3'- -GGCuuCCaGAA----CUUCU-GGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 102871 0.74 0.645393
Target:  5'- uCCGGGuGGUCaggUUGAGGGgCCCCUCCu- -3'
miRNA:   3'- -GGCUU-CCAG---AACUUCUgGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 30200 0.73 0.65562
Target:  5'- cCUGggGGUCcUGAcGGACCUCCUCUc- -3'
miRNA:   3'- -GGCuuCCAGaACU-UCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 59939 0.73 0.672956
Target:  5'- gCGAGGG-CUUGGacaggagcagguucAGGCCCCgCUCCAGg -3'
miRNA:   3'- gGCUUCCaGAACU--------------UCUGGGG-GAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 171594 0.73 0.676007
Target:  5'- -aGAGGGUCUUuAAGACCCCCcggacccCCAAa -3'
miRNA:   3'- ggCUUCCAGAAcUUCUGGGGGa------GGUU- -5'
3600 3' -54.4 NC_001650.1 + 4887 0.73 0.676007
Target:  5'- -aGAGGGUCUUuAAGACCCCCcggacccCCAAa -3'
miRNA:   3'- ggCUUCCAGAAcUUCUGGGGGa------GGUU- -5'
3600 3' -54.4 NC_001650.1 + 22045 0.73 0.690197
Target:  5'- aCCGcGAGGaUCUUGggGAuggggguggucgccuCCCCCUCCc- -3'
miRNA:   3'- -GGC-UUCC-AGAACuuCU---------------GGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 107530 0.73 0.696251
Target:  5'- cCCGggGGUCUccgugGggGACCUgCUgCAGa -3'
miRNA:   3'- -GGCuuCCAGAa----CuuCUGGGgGAgGUU- -5'
3600 3' -54.4 NC_001650.1 + 59862 0.72 0.706296
Target:  5'- gCCGAGGcGUCcgcGAAGGaCCCCUCCAGc -3'
miRNA:   3'- -GGCUUC-CAGaa-CUUCUgGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 14127 0.72 0.755399
Target:  5'- cCCGggGGUCcagGggGGCgCCUCUCUc- -3'
miRNA:   3'- -GGCuuCCAGaa-CuuCUG-GGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 180834 0.72 0.755399
Target:  5'- cCCGggGGUCcagGggGGCgCCUCUCUc- -3'
miRNA:   3'- -GGCuuCCAGaa-CuuCUG-GGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 83821 0.72 0.759225
Target:  5'- cUCGuuaAAGGUCUUGAcgcacucguguuuggAGACCgCCUCCAc -3'
miRNA:   3'- -GGC---UUCCAGAACU---------------UCUGGgGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 117373 0.71 0.763982
Target:  5'- -aGAGGGUCUcccccucUGAcGugCCCCUCCu- -3'
miRNA:   3'- ggCUUCCAGA-------ACUuCugGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 88635 0.71 0.76493
Target:  5'- cCUGAGGGUCUcgGGuAGuacuCCCCCUCCc- -3'
miRNA:   3'- -GGCUUCCAGAa-CU-UCu---GGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 48330 0.71 0.76493
Target:  5'- gCGggGGUCau--GGACCCCCUggCCAu -3'
miRNA:   3'- gGCuuCCAGaacuUCUGGGGGA--GGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.