Results 1 - 20 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3601 | 3' | -54.2 | NC_001650.1 | + | 127134 | 0.66 | 0.981461 |
Target: 5'- gGGAGACCaCCGgG-CC-C-CGGAGCCu -3' miRNA: 3'- -CCUCUGGgGGCgCaGGaGuGUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 36029 | 0.66 | 0.981461 |
Target: 5'- aGGAGuCCCuggCCGCGcCCcccuggCGCGGGACg -3' miRNA: 3'- -CCUCuGGG---GGCGCaGGa-----GUGUUUUGg -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 49796 | 0.66 | 0.981461 |
Target: 5'- cGAGuccACCUCCGCccCCaUCACAgAGACCa -3' miRNA: 3'- cCUC---UGGGGGCGcaGG-AGUGU-UUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 28524 | 0.66 | 0.981461 |
Target: 5'- gGGGGGagUuuGUGUCCU-GCAAGACCc -3' miRNA: 3'- -CCUCUggGggCGCAGGAgUGUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 52792 | 0.66 | 0.981461 |
Target: 5'- cGGcGGCCCUCGgGgcCCgggCGCAGGACg -3' miRNA: 3'- -CCuCUGGGGGCgCa-GGa--GUGUUUUGg -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 28424 | 0.66 | 0.981461 |
Target: 5'- -aAGaACUCCUGCauagacaaggggGUCCUCACGGGcACCg -3' miRNA: 3'- ccUC-UGGGGGCG------------CAGGAGUGUUU-UGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 76978 | 0.66 | 0.981258 |
Target: 5'- cGAGGCCUCCGUGUUgUUgguguagGCGGGGuCCa -3' miRNA: 3'- cCUCUGGGGGCGCAGgAG-------UGUUUU-GG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 30932 | 0.66 | 0.981258 |
Target: 5'- cGGGGucguggcACCgCCCGCGcgacguccUCCUCccACAugGCCa -3' miRNA: 3'- -CCUC-------UGG-GGGCGC--------AGGAG--UGUuuUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 155804 | 0.66 | 0.980216 |
Target: 5'- gGGGGACCuguagagggucagcuCCCcgcccgcgcacGCGUCCUCcaGGGACCc -3' miRNA: 3'- -CCUCUGG---------------GGG-----------CGCAGGAGugUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 59860 | 0.66 | 0.980002 |
Target: 5'- cGAGGCgUCCGCGaaggaccccuccagCCUCAgguggccCGAGACCa -3' miRNA: 3'- cCUCUGgGGGCGCa-------------GGAGU-------GUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 134125 | 0.66 | 0.979352 |
Target: 5'- gGGGGcGCCCCCaGCuGUaCUCugGGcGCCg -3' miRNA: 3'- -CCUC-UGGGGG-CG-CAgGAGugUUuUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 73488 | 0.66 | 0.979352 |
Target: 5'- --cGGCCCCC-CGggCCUCAgcCAcgGCCa -3' miRNA: 3'- ccuCUGGGGGcGCa-GGAGU--GUuuUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 77052 | 0.66 | 0.977068 |
Target: 5'- cGGGGGagCCCGUGUCCacgcggCACAggucAAACUg -3' miRNA: 3'- -CCUCUggGGGCGCAGGa-----GUGU----UUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 64248 | 0.66 | 0.977068 |
Target: 5'- aGGAGACCccgacguugCCCGCGaCCcCG-GAGACCc -3' miRNA: 3'- -CCUCUGG---------GGGCGCaGGaGUgUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 137714 | 0.66 | 0.977068 |
Target: 5'- gGGAGAUCCUgGaGUCCaagauCAGGGCCg -3' miRNA: 3'- -CCUCUGGGGgCgCAGGagu--GUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 57958 | 0.66 | 0.977068 |
Target: 5'- cGGGcuacuCCCCCGuCGcCCacccCGCGAGGCCg -3' miRNA: 3'- cCUCu----GGGGGC-GCaGGa---GUGUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 48116 | 0.66 | 0.977068 |
Target: 5'- aGGAGGgCgugaaCCGCGUCUUgACAGAgaagaaGCCc -3' miRNA: 3'- -CCUCUgGg----GGCGCAGGAgUGUUU------UGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 48272 | 0.66 | 0.977068 |
Target: 5'- cGGcuaGCCCCCuaG-CC-CACAGGGCCa -3' miRNA: 3'- -CCuc-UGGGGGcgCaGGaGUGUUUUGG- -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 78959 | 0.66 | 0.97683 |
Target: 5'- uGGGGGCgcagaugCCCCGCGgCC-CAgAGAGCg -3' miRNA: 3'- -CCUCUG-------GGGGCGCaGGaGUgUUUUGg -5' |
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3601 | 3' | -54.2 | NC_001650.1 | + | 81767 | 0.66 | 0.976349 |
Target: 5'- uGGAGuucGCCUCCGcCGUgcagacgcagaggaCCUCGCGcgGCUg -3' miRNA: 3'- -CCUC---UGGGGGC-GCA--------------GGAGUGUuuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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