miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 3' -54.2 NC_001650.1 + 178492 0.73 0.752485
Target:  5'- -cAGACCCCCGUGcCCacaaccccccaugaUCACAGAcCCa -3'
miRNA:   3'- ccUCUGGGGGCGCaGG--------------AGUGUUUuGG- -5'
3601 3' -54.2 NC_001650.1 + 42039 0.73 0.706994
Target:  5'- gGGGGACCCCCGacuccaaCCUCAuuCAAAAUCc -3'
miRNA:   3'- -CCUCUGGGGGCgca----GGAGU--GUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 108760 0.73 0.706994
Target:  5'- -aGGugCCCCGUGUacaggugccauaCCUCaACAAGACCu -3'
miRNA:   3'- ccUCugGGGGCGCA------------GGAG-UGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 133690 0.73 0.716818
Target:  5'- cGAGGCCcgcaCCUGCGgcugCCUCugAAAACUg -3'
miRNA:   3'- cCUCUGG----GGGCGCa---GGAGugUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 109280 0.73 0.716818
Target:  5'- gGGGGGCgCCCCGC-UCgUCGCccuGGCCa -3'
miRNA:   3'- -CCUCUG-GGGGCGcAGgAGUGuu-UUGG- -5'
3601 3' -54.2 NC_001650.1 + 23730 0.73 0.726571
Target:  5'- cGuGACCUCCugcGCGUCCUCGCGGcGCg -3'
miRNA:   3'- cCuCUGGGGG---CGCAGGAGUGUUuUGg -5'
3601 3' -54.2 NC_001650.1 + 42111 0.73 0.736245
Target:  5'- aGAGACCCCuCGC-UUCUCcCAGAACUc -3'
miRNA:   3'- cCUCUGGGG-GCGcAGGAGuGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 60557 0.73 0.745831
Target:  5'- uGGGGAacaUgCCCGCGUCgCUCAU--GACCg -3'
miRNA:   3'- -CCUCU---GgGGGCGCAG-GAGUGuuUUGG- -5'
3601 3' -54.2 NC_001650.1 + 11785 0.73 0.752485
Target:  5'- -cAGACCCCCGUGcCCacaaccccccaugaUCACAGAcCCa -3'
miRNA:   3'- ccUCUGGGGGCGCaGG--------------AGUGUUUuGG- -5'
3601 3' -54.2 NC_001650.1 + 170352 0.74 0.697109
Target:  5'- gGGGccGACCCCC-CGUCCccgUCACGGGGCg -3'
miRNA:   3'- -CCU--CUGGGGGcGCAGG---AGUGUUUUGg -5'
3601 3' -54.2 NC_001650.1 + 3645 0.74 0.697109
Target:  5'- gGGGccGACCCCC-CGUCCccgUCACGGGGCg -3'
miRNA:   3'- -CCU--CUGGGGGcGCAGG---AGUGUUUUGg -5'
3601 3' -54.2 NC_001650.1 + 24910 0.74 0.687171
Target:  5'- aGAGcACCCCCGCGguggCCUU-UAGGACCc -3'
miRNA:   3'- cCUC-UGGGGGCGCa---GGAGuGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 141641 0.77 0.537194
Target:  5'- cGGGGGCCCCCGCG-CgaaGCAAAACa -3'
miRNA:   3'- -CCUCUGGGGGCGCaGgagUGUUUUGg -5'
3601 3' -54.2 NC_001650.1 + 11737 0.76 0.566757
Target:  5'- aGAGACCuCCCGUGgaCCUCACcgcGACCa -3'
miRNA:   3'- cCUCUGG-GGGCGCa-GGAGUGuu-UUGG- -5'
3601 3' -54.2 NC_001650.1 + 178444 0.76 0.566757
Target:  5'- aGAGACCuCCCGUGgaCCUCACcgcGACCa -3'
miRNA:   3'- cCUCUGG-GGGCGCa-GGAGUGuu-UUGG- -5'
3601 3' -54.2 NC_001650.1 + 76878 0.76 0.586697
Target:  5'- aGGAGGCCCCCGUGagcUCCUuCAgGAAAa- -3'
miRNA:   3'- -CCUCUGGGGGCGC---AGGA-GUgUUUUgg -5'
3601 3' -54.2 NC_001650.1 + 126274 0.76 0.595715
Target:  5'- uGGAGAugucacaguguUCCCCGCGUCCaguuUCggccccuGCGAGACCg -3'
miRNA:   3'- -CCUCU-----------GGGGGCGCAGG----AG-------UGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 21431 0.75 0.606765
Target:  5'- cGGGGGucagcCCCCCGUGUCCUC-CuucGCCu -3'
miRNA:   3'- -CCUCU-----GGGGGCGCAGGAGuGuuuUGG- -5'
3601 3' -54.2 NC_001650.1 + 60128 0.75 0.636985
Target:  5'- cGGAGGCCgcgUCCGCGgUCUC-CAGGGCCa -3'
miRNA:   3'- -CCUCUGG---GGGCGCaGGAGuGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 88224 0.74 0.667172
Target:  5'- cGAGGCCUCCGCGUUCgagaGCGGAAUUc -3'
miRNA:   3'- cCUCUGGGGGCGCAGGag--UGUUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.