miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 60126 0.66 0.843012
Target:  5'- -cGCGGAGGCCGcGuCCGCGGucuccAGGGCc -3'
miRNA:   3'- ucCGCUUCCGGCuCcGGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 57925 0.66 0.843012
Target:  5'- cGGgGAAGGgCGcGGCCG---GGGGCg -3'
miRNA:   3'- uCCgCUUCCgGCuCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 121205 0.66 0.843012
Target:  5'- cGGCGGAcGGUgGAGGCCuuccuGGAg -3'
miRNA:   3'- uCCGCUU-CCGgCUCCGGuguuuCCUg -5'
3602 3' -57.8 NC_001650.1 + 170945 0.66 0.842215
Target:  5'- uGGC--AGGCCGAguuccccauuucuGGCCAauGGGGACu -3'
miRNA:   3'- uCCGcuUCCGGCU-------------CCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 4238 0.66 0.842215
Target:  5'- uGGC--AGGCCGAguuccccauuucuGGCCAauGGGGACu -3'
miRNA:   3'- uCCGcuUCCGGCU-------------CCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 141389 0.66 0.840614
Target:  5'- cGGCG--GGCCGGGGUCACccagaguucgcgccAGGGGuCg -3'
miRNA:   3'- uCCGCuuCCGGCUCCGGUG--------------UUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 129358 0.66 0.839811
Target:  5'- aGGGCGAagaGGGCCGcccccguguccucGGCCccgggcGCGGGGGAg -3'
miRNA:   3'- -UCCGCU---UCCGGCu------------CCGG------UGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 175142 0.66 0.834955
Target:  5'- gAGGgGGAGGCauuGGCCGgugGAGGGCc -3'
miRNA:   3'- -UCCgCUUCCGgcuCCGGUgu-UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 16537 0.66 0.834955
Target:  5'- -uGUGAGGGUCcucugucaauggGuGGCCACAGAGGGu -3'
miRNA:   3'- ucCGCUUCCGG------------CuCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 130626 0.66 0.834955
Target:  5'- -cGUGggGGuccucaCCGAGGCCAUAGAG-ACc -3'
miRNA:   3'- ucCGCuuCC------GGCUCCGGUGUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 120910 0.66 0.834955
Target:  5'- aAGGUGAcagguuGGCUGAGGuCCAgGGAGcGCa -3'
miRNA:   3'- -UCCGCUu-----CCGGCUCC-GGUgUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 111084 0.66 0.834955
Target:  5'- cGGCGgcGGCgauaGGGGCCcguagcugaaAAGGGGCg -3'
miRNA:   3'- uCCGCuuCCGg---CUCCGGug--------UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 86239 0.66 0.834955
Target:  5'- ---gGAGGGCgaCGAGGCCACcGAGGcCu -3'
miRNA:   3'- uccgCUUCCG--GCUCCGGUGuUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 183244 0.66 0.834955
Target:  5'- -uGUGAGGGUCcucugucaauggGuGGCCACAGAGGGu -3'
miRNA:   3'- ucCGCUUCCGG------------CuCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 8435 0.66 0.834955
Target:  5'- gAGGgGGAGGCauuGGCCGgugGAGGGCc -3'
miRNA:   3'- -UCCgCUUCCGgcuCCGGUgu-UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 98333 0.66 0.834955
Target:  5'- gAGGCGggGGgCGAcgggggguguGGUUgcgGCGAGGGAg -3'
miRNA:   3'- -UCCGCuuCCgGCU----------CCGG---UGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129465 0.67 0.82672
Target:  5'- uGGCGgcGGagCG-GGCCACcAGGGAg -3'
miRNA:   3'- uCCGCuuCCg-GCuCCGGUGuUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 155623 0.67 0.82672
Target:  5'- aGGGgGGAGGa-GAGGUgGgGAGGGGCc -3'
miRNA:   3'- -UCCgCUUCCggCUCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 66860 0.67 0.82672
Target:  5'- uGGCGG-GGCCGcGGGaggCGCcGGGGGCg -3'
miRNA:   3'- uCCGCUuCCGGC-UCCg--GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150984 0.67 0.82672
Target:  5'- uGGCGgcGGUgGuGGCgGCGGAGGu- -3'
miRNA:   3'- uCCGCuuCCGgCuCCGgUGUUUCCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.