miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 110672 0.67 0.442324
Target:  5'- aCGCgCCCCCUCGGGCGa-----UGCCg -3'
miRNA:   3'- cGCG-GGGGGAGCCCGCccagagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 81813 0.67 0.439034
Target:  5'- cGCGCCCUgugcggcgaccucgCgUCGGGCGaccccgaggcccuGGUggaguucgcCUCCGCCg -3'
miRNA:   3'- -CGCGGGG--------------GgAGCCCGC-------------CCA---------GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 60320 0.68 0.434126
Target:  5'- -gGUCCCCCaggaGGGCGGGgagCUgcaggCGCCg -3'
miRNA:   3'- cgCGGGGGGag--CCCGCCCa--GAg----GCGG- -5'
3602 5' -66.6 NC_001650.1 + 56371 0.68 0.426017
Target:  5'- gGCGCUCgCCCaCGGGCGaaccGGg--CCGCCc -3'
miRNA:   3'- -CGCGGG-GGGaGCCCGC----CCagaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 60322 0.68 0.426017
Target:  5'- cGCGgCCUCCgCGGGCggcGGGUCgg-GCCa -3'
miRNA:   3'- -CGCgGGGGGaGCCCG---CCCAGaggCGG- -5'
3602 5' -66.6 NC_001650.1 + 53048 0.68 0.417999
Target:  5'- cGCGCCCgcuCCCa-GGGCGGGcagggCGCCg -3'
miRNA:   3'- -CGCGGG---GGGagCCCGCCCagag-GCGG- -5'
3602 5' -66.6 NC_001650.1 + 128408 0.68 0.417999
Target:  5'- uUGCUCUCC-CGGGCGa-UCUCCGCg -3'
miRNA:   3'- cGCGGGGGGaGCCCGCccAGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 52842 0.68 0.417999
Target:  5'- cUGCCCgCCCUgGGaGCGGG-Cg-CGCCu -3'
miRNA:   3'- cGCGGG-GGGAgCC-CGCCCaGagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 22444 0.68 0.414817
Target:  5'- cGCGCCCaCCCUCcuGGGCuucgugaGGGUgauggacgggagcgCggcgCCGCCc -3'
miRNA:   3'- -CGCGGG-GGGAG--CCCG-------CCCA--------------Ga---GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 107044 0.68 0.410073
Target:  5'- aGCGCCcaCCCCUgcaccguccaUGGaGCGGGUggCCGUCc -3'
miRNA:   3'- -CGCGG--GGGGA----------GCC-CGCCCAgaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 136827 0.68 0.410073
Target:  5'- gGCGCCCcgacgCCCcCGGGCGGugggcuggguuuGUCUUCggGCCu -3'
miRNA:   3'- -CGCGGG-----GGGaGCCCGCC------------CAGAGG--CGG- -5'
3602 5' -66.6 NC_001650.1 + 21772 0.68 0.410073
Target:  5'- gGCGCCCCCU---GGUGGGgga-CGCCg -3'
miRNA:   3'- -CGCGGGGGGagcCCGCCCagagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 58560 0.68 0.402241
Target:  5'- uCGCCCCCCUuggcccCGGGCaGGGcgUCCGg- -3'
miRNA:   3'- cGCGGGGGGA------GCCCG-CCCagAGGCgg -5'
3602 5' -66.6 NC_001650.1 + 93721 0.68 0.402241
Target:  5'- cGCGCCgCUCUUGuacaGGgGGGUCUgCaGCCa -3'
miRNA:   3'- -CGCGGgGGGAGC----CCgCCCAGAgG-CGG- -5'
3602 5' -66.6 NC_001650.1 + 101871 0.68 0.402241
Target:  5'- -aGCCUCCgUgCaGGCGGGcggCUUCGCCa -3'
miRNA:   3'- cgCGGGGGgA-GcCCGCCCa--GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 66652 0.68 0.401463
Target:  5'- cGCGgCCCCCUUcuccaagccggugGcGGCGGG-CUCCacggGCCc -3'
miRNA:   3'- -CGCgGGGGGAG-------------C-CCGCCCaGAGG----CGG- -5'
3602 5' -66.6 NC_001650.1 + 29241 0.68 0.394505
Target:  5'- cGCGCCCCgagggCGuGCGGGUaCUCCucgGCCg -3'
miRNA:   3'- -CGCGGGGgga--GCcCGCCCA-GAGG---CGG- -5'
3602 5' -66.6 NC_001650.1 + 167325 0.68 0.394505
Target:  5'- cCGCCCuCCCcCGGGCccccauuggucGGUCUCCcCCg -3'
miRNA:   3'- cGCGGG-GGGaGCCCGc----------CCAGAGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 618 0.68 0.394505
Target:  5'- cCGCCCuCCCcCGGGCccccauuggucGGUCUCCcCCg -3'
miRNA:   3'- cGCGGG-GGGaGCCCGc----------CCAGAGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 111490 0.68 0.386866
Target:  5'- -gGCCaCCCC-CGGGCuGGugaUCcCCGCCg -3'
miRNA:   3'- cgCGG-GGGGaGCCCGcCC---AGaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.