Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 62927 | 0.66 | 0.979528 |
Target: 5'- gCGCCCACCCUuGUccuuuuucuGGCACAccuccucaucGUACg -3' miRNA: 3'- -GCGGGUGGGA-CA---------UCGUGUcaua------CAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 36089 | 0.66 | 0.978146 |
Target: 5'- cCGCCCGCCCcgcgugaaacuccagGUcccccgcGGCGCAGUc-GUACu -3' miRNA: 3'- -GCGGGUGGGa--------------CA-------UCGUGUCAuaCAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 22122 | 0.66 | 0.97304 |
Target: 5'- aGCUCAgCUgGUuGCACAGcAUGUACg -3' miRNA: 3'- gCGGGUgGGaCAuCGUGUCaUACAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 52843 | 0.66 | 0.970186 |
Target: 5'- uGCCCGCCCUGggagcgGGCGCGc------- -3' miRNA: 3'- gCGGGUGGGACa-----UCGUGUcauacaug -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 94133 | 0.66 | 0.967123 |
Target: 5'- uCGCgCCACCCUGguucaGGgACAGggucucGUGCa -3' miRNA: 3'- -GCG-GGUGGGACa----UCgUGUCaua---CAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 76459 | 0.66 | 0.967123 |
Target: 5'- cCGagCCGCCCuUGUgcuuGGCGCAGUAggacacgGUGCc -3' miRNA: 3'- -GCg-GGUGGG-ACA----UCGUGUCAUa------CAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 87673 | 0.67 | 0.960341 |
Target: 5'- aCGCCCACCCUGUaccuggaggAGCcCGagAUGUuCg -3' miRNA: 3'- -GCGGGUGGGACA---------UCGuGUcaUACAuG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 128333 | 0.67 | 0.952651 |
Target: 5'- aCGCUCucGCCCU-UGGUGCAGaugAUGUACg -3' miRNA: 3'- -GCGGG--UGGGAcAUCGUGUCa--UACAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 38969 | 0.67 | 0.948454 |
Target: 5'- uCGCCCACCCacGUugcGCGCGGgagAUGg-- -3' miRNA: 3'- -GCGGGUGGGa-CAu--CGUGUCa--UACaug -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 157813 | 0.68 | 0.939339 |
Target: 5'- uGCCCAucuggguuCUCUGUugcccaggggcGGCGCGGUGcUGUACc -3' miRNA: 3'- gCGGGU--------GGGACA-----------UCGUGUCAU-ACAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 136685 | 0.68 | 0.929247 |
Target: 5'- uCGCCCGCUCUGUGGgC-CcGUAUGg-- -3' miRNA: 3'- -GCGGGUGGGACAUC-GuGuCAUACaug -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 72523 | 0.69 | 0.91817 |
Target: 5'- uCGUCCACCCUGUuguuGUACAGg------ -3' miRNA: 3'- -GCGGGUGGGACAu---CGUGUCauacaug -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 158353 | 0.69 | 0.912263 |
Target: 5'- gCGCCC-CCCUcggcggccgggGUcAGCGCGGUGgcggGUACc -3' miRNA: 3'- -GCGGGuGGGA-----------CA-UCGUGUCAUa---CAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 107988 | 0.69 | 0.906112 |
Target: 5'- --aCCGCCCUGUGGUuCAgguugguuuGUAUGUACc -3' miRNA: 3'- gcgGGUGGGACAUCGuGU---------CAUACAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 40333 | 0.69 | 0.906112 |
Target: 5'- aCGCCCA-UCUGUGGCgACGccGUGUGUGa -3' miRNA: 3'- -GCGGGUgGGACAUCG-UGU--CAUACAUg -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 27415 | 0.69 | 0.893088 |
Target: 5'- cCGCCC-CCCUGUGGC-CGGUc----- -3' miRNA: 3'- -GCGGGuGGGACAUCGuGUCAuacaug -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 164402 | 0.69 | 0.893088 |
Target: 5'- uCGCCCAgCCUGagagacaGGCGCGGggcGUGCu -3' miRNA: 3'- -GCGGGUgGGACa------UCGUGUCauaCAUG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 74927 | 0.7 | 0.856488 |
Target: 5'- gGCCCuGCCCaUGUGGUGCAGgGUGgucGCg -3' miRNA: 3'- gCGGG-UGGG-ACAUCGUGUCaUACa--UG- -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 15370 | 0.7 | 0.848517 |
Target: 5'- gCGCCgCGCCC-GUGGCGCGGcgccauguUGUGUGu -3' miRNA: 3'- -GCGG-GUGGGaCAUCGUGUC--------AUACAUg -5' |
|||||||
3603 | 3' | -53.3 | NC_001650.1 | + | 182077 | 0.7 | 0.848517 |
Target: 5'- gCGCCgCGCCC-GUGGCGCGGcgccauguUGUGUGu -3' miRNA: 3'- -GCGG-GUGGGaCAUCGUGUC--------AUACAUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home