miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3604 3' -51.7 NC_001650.1 + 22737 0.66 0.994572
Target:  5'- cGGUGcUGUCCACGU--GCCagaGCAGGCu -3'
miRNA:   3'- -CCACaAUAGGUGCGgcCGG---UGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 23582 0.66 0.993723
Target:  5'- aGG-GUUcgaCCACcaccauagaguaGUCGGCCACGGGCAg -3'
miRNA:   3'- -CCaCAAua-GGUG------------CGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 24852 1.12 0.006093
Target:  5'- aGGUGUUAUCCACGCCGGCCACAAACAg -3'
miRNA:   3'- -CCACAAUAGGUGCGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 27184 0.68 0.972205
Target:  5'- aGGUGUacgagugcagggagUuUCCAgCGaCCGGCCACAGGgGg -3'
miRNA:   3'- -CCACA--------------AuAGGU-GC-GGCCGGUGUUUgU- -5'
3604 3' -51.7 NC_001650.1 + 27454 0.67 0.984414
Target:  5'- cGGUGcUGUaCCugGCCcgGGuCCAgAAGCAg -3'
miRNA:   3'- -CCACaAUA-GGugCGG--CC-GGUgUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 30572 0.73 0.848517
Target:  5'- cGUGcucUCCAUGCUGGCCGCGGuCAa -3'
miRNA:   3'- cCACaauAGGUGCGGCCGGUGUUuGU- -5'
3604 3' -51.7 NC_001650.1 + 42741 0.7 0.939338
Target:  5'- gGGUGUgacgGUCCgggcGCGCCgguGGCCACcuGCc -3'
miRNA:   3'- -CCACAa---UAGG----UGCGG---CCGGUGuuUGu -5'
3604 3' -51.7 NC_001650.1 + 48862 0.66 0.994572
Target:  5'- -------aUCAUGCUGGCCAUGAACGg -3'
miRNA:   3'- ccacaauaGGUGCGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 49177 0.67 0.989212
Target:  5'- uGGUGUccgagggCCgcGCGCUGGCCgaggGCGAGCu -3'
miRNA:   3'- -CCACAaua----GG--UGCGGCCGG----UGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 49570 0.68 0.969889
Target:  5'- aGGUGUUggcucugGUCCugaugGCCGuGCCACAGAg- -3'
miRNA:   3'- -CCACAA-------UAGGug---CGGC-CGGUGUUUgu -5'
3604 3' -51.7 NC_001650.1 + 49603 0.75 0.719441
Target:  5'- aGGUGgacUCgAUGCUGGUCACGGACAg -3'
miRNA:   3'- -CCACaauAGgUGCGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 57622 0.66 0.991708
Target:  5'- aGUGccGUgCGCGCCcgGGCCGCAGGgGg -3'
miRNA:   3'- cCACaaUAgGUGCGG--CCGGUGUUUgU- -5'
3604 3' -51.7 NC_001650.1 + 58027 0.68 0.980413
Target:  5'- uGGUG---UCCAgGuuGGUCugGAGCAu -3'
miRNA:   3'- -CCACaauAGGUgCggCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 60551 0.66 0.992772
Target:  5'- uGGUGUUGgggaacaugcCCGCGUCGcucaugaCCGCGAACAu -3'
miRNA:   3'- -CCACAAUa---------GGUGCGGCc------GGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 60741 0.71 0.893088
Target:  5'- ---cUUGUCCAgGUCGGCCAgGAGCu -3'
miRNA:   3'- ccacAAUAGGUgCGGCCGGUgUUUGu -5'
3604 3' -51.7 NC_001650.1 + 65193 0.72 0.879122
Target:  5'- --cGUccUCCAgGCCGGCCACGGcCAu -3'
miRNA:   3'- ccaCAauAGGUgCGGCCGGUGUUuGU- -5'
3604 3' -51.7 NC_001650.1 + 68323 0.68 0.978146
Target:  5'- gGGUGgaguUCCA-GuuGGCCACGGAg- -3'
miRNA:   3'- -CCACaau-AGGUgCggCCGGUGUUUgu -5'
3604 3' -51.7 NC_001650.1 + 70846 0.7 0.948454
Target:  5'- aGGUGUgcUCCACcagGUgGGCCuuGAACAu -3'
miRNA:   3'- -CCACAauAGGUG---CGgCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 71182 0.69 0.960341
Target:  5'- uGGgGUUGUCCACcaGCCuGGaCACAAACu -3'
miRNA:   3'- -CCaCAAUAGGUG--CGG-CCgGUGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 71500 0.69 0.952242
Target:  5'- gGGUGUUGUucuuguuaaccacCCACGCCu-CCACGGGCu -3'
miRNA:   3'- -CCACAAUA-------------GGUGCGGccGGUGUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.