Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3604 | 3' | -51.7 | NC_001650.1 | + | 164380 | 0.66 | 0.993633 |
Target: 5'- aGUGUgGUCCGCGCUGcagaacucgcccaGCCugAgaGACAg -3' miRNA: 3'- cCACAaUAGGUGCGGC-------------CGGugU--UUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 58027 | 0.68 | 0.980413 |
Target: 5'- uGGUG---UCCAgGuuGGUCugGAGCAu -3' miRNA: 3'- -CCACaauAGGUgCggCCGGugUUUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 89491 | 0.67 | 0.982499 |
Target: 5'- aGGcGggGUUCGCGUgGGCCGCcaucGACAa -3' miRNA: 3'- -CCaCaaUAGGUGCGgCCGGUGu---UUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 120526 | 0.67 | 0.984414 |
Target: 5'- aGGUGcc-UCUggGCGCCGGCgACcuGCAg -3' miRNA: 3'- -CCACaauAGG--UGCGGCCGgUGuuUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 27454 | 0.67 | 0.984414 |
Target: 5'- cGGUGcUGUaCCugGCCcgGGuCCAgAAGCAg -3' miRNA: 3'- -CCACaAUA-GGugCGG--CC-GGUgUUUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 157083 | 0.67 | 0.987762 |
Target: 5'- --aGUacUCCuuGCUGGCCACGGugGg -3' miRNA: 3'- ccaCAauAGGugCGGCCGGUGUUugU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 49177 | 0.67 | 0.989212 |
Target: 5'- uGGUGUccgagggCCgcGCGCUGGCCgaggGCGAGCu -3' miRNA: 3'- -CCACAaua----GG--UGCGGCCGG----UGUUUGu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 80667 | 0.66 | 0.991708 |
Target: 5'- cGGgagGaagAUCCACGCCaacguGGCCGgGGGCu -3' miRNA: 3'- -CCa--Caa-UAGGUGCGG-----CCGGUgUUUGu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 60551 | 0.66 | 0.992772 |
Target: 5'- uGGUGUUGgggaacaugcCCGCGUCGcucaugaCCGCGAACAu -3' miRNA: 3'- -CCACAAUa---------GGUGCGGCc------GGUGUUUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 68323 | 0.68 | 0.978146 |
Target: 5'- gGGUGgaguUCCA-GuuGGCCACGGAg- -3' miRNA: 3'- -CCACaau-AGGUgCggCCGGUGUUUgu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 27184 | 0.68 | 0.972205 |
Target: 5'- aGGUGUacgagugcagggagUuUCCAgCGaCCGGCCACAGGgGg -3' miRNA: 3'- -CCACA--------------AuAGGU-GC-GGCCGGUGUUUgU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 105179 | 0.69 | 0.963843 |
Target: 5'- aGUGUUggUCAUGgUGGCUACAAACu -3' miRNA: 3'- cCACAAuaGGUGCgGCCGGUGUUUGu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 30572 | 0.73 | 0.848517 |
Target: 5'- cGUGcucUCCAUGCUGGCCGCGGuCAa -3' miRNA: 3'- cCACaauAGGUGCGGCCGGUGUUuGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 77871 | 0.72 | 0.856488 |
Target: 5'- gGGUGgagaaggCCGCGCUGGuCCugGAGCu -3' miRNA: 3'- -CCACaaua---GGUGCGGCC-GGugUUUGu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 60741 | 0.71 | 0.893088 |
Target: 5'- ---cUUGUCCAgGUCGGCCAgGAGCu -3' miRNA: 3'- ccacAAUAGGUgCGGCCGGUgUUUGu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 76097 | 0.71 | 0.902305 |
Target: 5'- uGGUGcucAUCCugcugaucauaguguGCGCCGGCUACGuGCAc -3' miRNA: 3'- -CCACaa-UAGG---------------UGCGGCCGGUGUuUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 142688 | 0.71 | 0.912263 |
Target: 5'- -------gCCGCGCCGGCCgAUAAGCGg -3' miRNA: 3'- ccacaauaGGUGCGGCCGG-UGUUUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 72612 | 0.7 | 0.934415 |
Target: 5'- cGGUGgacaugAUCCgcACGCUGGCCACc---- -3' miRNA: 3'- -CCACaa----UAGG--UGCGGCCGGUGuuugu -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 98341 | 0.7 | 0.939338 |
Target: 5'- aGGgaucuUCCGCaccGCCGGCCGCAcccAACAg -3' miRNA: 3'- -CCacaauAGGUG---CGGCCGGUGU---UUGU- -5' |
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3604 | 3' | -51.7 | NC_001650.1 | + | 119824 | 0.69 | 0.960341 |
Target: 5'- gGGUGUggggcgcggcGUCCGCGCCcaGCCcGCAGACc -3' miRNA: 3'- -CCACAa---------UAGGUGCGGc-CGG-UGUUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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