miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 100299 0.67 0.575775
Target:  5'- gAGGCCGUccgcaggugcggGGAGaggCGCGCCuCGGGGGu -3'
miRNA:   3'- gUCCGGUA------------CCUCgg-GUGCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 23788 0.67 0.575775
Target:  5'- -uGGCUAUGGGGgCCAgGgCCAGGc- -3'
miRNA:   3'- guCCGGUACCUCgGGUgCgGGUCCcu -5'
3605 3' -63.1 NC_001650.1 + 60200 0.67 0.566174
Target:  5'- aGGGCCugaucGGGGCCCAgacCGCCCuGcGGc -3'
miRNA:   3'- gUCCGGua---CCUCGGGU---GCGGGuC-CCu -5'
3605 3' -63.1 NC_001650.1 + 125143 0.67 0.566174
Target:  5'- aGGGCgAUGaGGGUCUucCGCCCcGGGAc -3'
miRNA:   3'- gUCCGgUAC-CUCGGGu-GCGGGuCCCU- -5'
3605 3' -63.1 NC_001650.1 + 68497 0.67 0.566174
Target:  5'- aGGGCC-UGGAGaaCCagcagcugguGCGCCgGGGGAg -3'
miRNA:   3'- gUCCGGuACCUCg-GG----------UGCGGgUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 138881 0.67 0.556615
Target:  5'- gGGGCCAUgcuggcagacaGGGGCCaugCugGCagaCAGGGGa -3'
miRNA:   3'- gUCCGGUA-----------CCUCGG---GugCGg--GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 94990 0.67 0.556615
Target:  5'- -uGGCCAUGaccauAGCCaAgGCCCAGGGc -3'
miRNA:   3'- guCCGGUACc----UCGGgUgCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 180646 0.67 0.547102
Target:  5'- cCGGGaCCAUGGAGCCCcCaUCCcuGGAc -3'
miRNA:   3'- -GUCC-GGUACCUCGGGuGcGGGucCCU- -5'
3605 3' -63.1 NC_001650.1 + 15202 0.67 0.547102
Target:  5'- aGGGCCaAUGaagcgucgcgcGGGCCgCGCGUugCCAGGGAa -3'
miRNA:   3'- gUCCGG-UAC-----------CUCGG-GUGCG--GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 141387 0.67 0.547102
Target:  5'- gCGGGCCggGGucaCCCAgaguuCGCgCCAGGGGu -3'
miRNA:   3'- -GUCCGGuaCCuc-GGGU-----GCG-GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 181909 0.67 0.547102
Target:  5'- aGGGCCaAUGaagcgucgcgcGGGCCgCGCGUugCCAGGGAa -3'
miRNA:   3'- gUCCGG-UAC-----------CUCGG-GUGCG--GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 13940 0.67 0.547102
Target:  5'- cCGGGaCCAUGGAGCCCcCaUCCcuGGAc -3'
miRNA:   3'- -GUCC-GGUACCUCGGGuGcGGGucCCU- -5'
3605 3' -63.1 NC_001650.1 + 62870 0.67 0.547102
Target:  5'- gCAGaGCCAgGGGGCUCcggaGCaCCCGGGGGc -3'
miRNA:   3'- -GUC-CGGUaCCUCGGG----UGcGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 37603 0.67 0.537641
Target:  5'- -cGGCCuccagcuugAUGGGGUCCACGaaCAGGGu -3'
miRNA:   3'- guCCGG---------UACCUCGGGUGCggGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 73538 0.67 0.537641
Target:  5'- aCAGGUCcuggcaGUGGAcGCCCAUGUCCGuGGuGAu -3'
miRNA:   3'- -GUCCGG------UACCU-CGGGUGCGGGU-CC-CU- -5'
3605 3' -63.1 NC_001650.1 + 117663 0.67 0.528238
Target:  5'- cCGGG-CGUGGGGCacaCCcCGCCCAGGa- -3'
miRNA:   3'- -GUCCgGUACCUCG---GGuGCGGGUCCcu -5'
3605 3' -63.1 NC_001650.1 + 14373 0.67 0.528238
Target:  5'- aGGGuCCAUGuGGGUCCAgggaGUCCGGGGu -3'
miRNA:   3'- gUCC-GGUAC-CUCGGGUg---CGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 71631 0.67 0.528238
Target:  5'- gAGcCCGUGG-GCCUccauGCGCUCGGGGGc -3'
miRNA:   3'- gUCcGGUACCuCGGG----UGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 181080 0.67 0.528238
Target:  5'- aGGGuCCAUGuGGGUCCAgggaGUCCGGGGu -3'
miRNA:   3'- gUCC-GGUAC-CUCGGGUg---CGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 69366 0.67 0.528238
Target:  5'- -uGGCCGgaccUGGAggcGCUCGCGCCCcugAGGGc -3'
miRNA:   3'- guCCGGU----ACCU---CGGGUGCGGG---UCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.