miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 101752 0.66 0.997412
Target:  5'- -gUUCCagGGGguGggGGUCCa-GAUCa -3'
miRNA:   3'- ggAAGGa-CCUguCuuUCAGGgaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 123064 0.66 0.997412
Target:  5'- ---cCCUGGAUugGGAAAaGUUCCUGcgCa -3'
miRNA:   3'- ggaaGGACCUG--UCUUU-CAGGGACuaG- -5'
3605 5' -50.9 NC_001650.1 + 24739 0.66 0.997412
Target:  5'- aCUUUCUGucCAGGAAGgacaccuucUCCCUGggCg -3'
miRNA:   3'- gGAAGGACcuGUCUUUC---------AGGGACuaG- -5'
3605 5' -50.9 NC_001650.1 + 165655 0.66 0.996891
Target:  5'- gCCUUCCUccccuccccGGGCAGGguuacaaaaaaaaGAGgggCCCUGGc- -3'
miRNA:   3'- -GGAAGGA---------CCUGUCU-------------UUCa--GGGACUag -5'
3605 5' -50.9 NC_001650.1 + 143717 0.66 0.995789
Target:  5'- ---gCCUGGcCcuGAGGUCCCUGAa- -3'
miRNA:   3'- ggaaGGACCuGucUUUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 94077 0.66 0.995789
Target:  5'- aCCUcCCUgugGGACAcGAAGagCCUGGUCc -3'
miRNA:   3'- -GGAaGGA---CCUGUcUUUCagGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 76036 0.66 0.995091
Target:  5'- aCUcCCgggaaggGGACGGAcAGUCCCaUGGUg -3'
miRNA:   3'- gGAaGGa------CCUGUCUuUCAGGG-ACUAg -5'
3605 5' -50.9 NC_001650.1 + 89126 0.66 0.994302
Target:  5'- --gUCCUGGcCAGcAGGG-CCCUGAa- -3'
miRNA:   3'- ggaAGGACCuGUC-UUUCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 154663 0.67 0.993782
Target:  5'- cCCUggugCaCUGGAacucucccuuauuuuCAGGAGGUCCCUGc-- -3'
miRNA:   3'- -GGAa---G-GACCU---------------GUCUUUCAGGGACuag -5'
3605 5' -50.9 NC_001650.1 + 101693 0.67 0.993414
Target:  5'- cCCUUCCU--GCAGAaccccgagGAGUUCCUGGc- -3'
miRNA:   3'- -GGAAGGAccUGUCU--------UUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 77829 0.67 0.993414
Target:  5'- gCCUcCCUGGGCgAGggGGcaaCCUGGacUCg -3'
miRNA:   3'- -GGAaGGACCUG-UCuuUCag-GGACU--AG- -5'
3605 5' -50.9 NC_001650.1 + 179220 0.67 0.992419
Target:  5'- cCCUUCUcucuUGuACAuGggGGUCCCUGGg- -3'
miRNA:   3'- -GGAAGG----ACcUGU-CuuUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 12513 0.67 0.992419
Target:  5'- cCCUUCUcucuUGuACAuGggGGUCCCUGGg- -3'
miRNA:   3'- -GGAAGG----ACcUGU-CuuUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 72545 0.67 0.992313
Target:  5'- cCCaUCCUGGACcaccuggAGAAcgGGaCCCUGAg- -3'
miRNA:   3'- -GGaAGGACCUG-------UCUU--UCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 156051 0.67 0.991307
Target:  5'- ----gCUGGACGcGGGGUCCCUGGa- -3'
miRNA:   3'- ggaagGACCUGUcUUUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 152357 0.67 0.991307
Target:  5'- aCCUUUCguUGGuuucuUGGAAGG-CCCUGGUCu -3'
miRNA:   3'- -GGAAGG--ACCu----GUCUUUCaGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 140121 0.67 0.990071
Target:  5'- gCUUCCUGGACcccuGGAuuGcUUCCUGGa- -3'
miRNA:   3'- gGAAGGACCUG----UCUuuC-AGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 73398 0.67 0.990071
Target:  5'- uCCUUCCUGGugACGGAGGGcagCCCc---- -3'
miRNA:   3'- -GGAAGGACC--UGUCUUUCa--GGGacuag -5'
3605 5' -50.9 NC_001650.1 + 152621 0.67 0.990071
Target:  5'- cCCUUCCUGGGCgAGcAGG-CCCUu--- -3'
miRNA:   3'- -GGAAGGACCUG-UCuUUCaGGGAcuag -5'
3605 5' -50.9 NC_001650.1 + 101896 0.67 0.9887
Target:  5'- gCCaUCCa-GACGGAGAGUCCCaUGGa- -3'
miRNA:   3'- -GGaAGGacCUGUCUUUCAGGG-ACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.